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BioLiP
>protein
LYNVALIKFKDIADKRGHLTPIEGKIDIPFDIKRVYYITKVDKDITRGYHSHKKLHQVLICLNGSVKIRLKIPDEEKIIE
LNDPSVGLYIGPLVWHEMFDFTEGCVLLVLASEYYDETDYIRNYDFYIDEAKKRFLE

The query sequence (length=137) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4o9g:A 138 137 0.9781 0.9710 0.9781 7.09e-95 4o9e:A, 4o9e:B, 4o9g:B, 4zu5:B, 4zu7:A, 4zu7:B, 4zu7:C, 4zu7:D, 4zu7:E, 4zu7:F, 4zu7:G, 4zu7:H
2 2pae:A 136 122 0.4964 0.5000 0.5574 5.34e-45 2pa7:A, 2pa7:B, 2pae:B, 2pak:A, 2pak:B, 2pam:A, 2pam:B
3 5tpu:A 133 126 0.4307 0.4436 0.4683 1.76e-35 5tpu:B, 5tpu:C, 5tpu:D
4 7n67:B 133 123 0.4161 0.4286 0.4634 1.61e-34 7n67:A
5 5tpv:B 138 127 0.3358 0.3333 0.3622 8.42e-26 5tpv:A, 5tpv:C
6 4mzu:F 294 124 0.3285 0.1531 0.3629 8.63e-21 4mzu:A, 4mzu:C, 4mzu:E, 4mzu:B, 4mzu:D, 4mzu:G, 4mzu:I, 4mzu:K, 4mzu:H, 4mzu:J, 4mzu:L, 4zu4:A, 4zu4:B, 4zu4:C
7 8w9z:G 218 93 0.1679 0.1055 0.2473 0.67 8wa0:G, 8wa1:G
8 7pwh:AAA 203 125 0.1971 0.1330 0.2160 1.3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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