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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
LYFSRDAYWEKLYVDQAAGTPLLYVHALRDAPEEVPSFRLGQHLYGTYRTRLHENNWICIQEDTGLLYLNRSLDHSSWEK
LSVRNHGFPLLTVYLKVFLSGECQWPGCARVYFSFFNTSFPACSSLKPRELCFPETRPSFRIRENRPPGTFHQFRLLPVQ
FLCPNISVAYRLLGLPFRCAPDSLEVSTRWALDREQREKYELVAVCTVHEEVVMVPFPVTVYDEDDSAPTFPAGVDTASA
VVEFKRKEDTVVATLRVFDADVVPASGELVRRYTSTLLPGDTWAQQTFRVEHWPNETSVQANGSFVRATVHDYRLVLNRN
LSISENRTMQLAVLVNDSVLLLHFNVSVLPVSLHLPSTYSLSVSRRARRFAQIGKVCVENCQAFSGINVQYKLHSSCSTL
GVVTSAEDTSGILFVNPKCAELHYMVVATDQQTSRQAQAQLLVTVEGCPLSCAVSKRRLECEECGGLGSPTGRCEWRQGK
GITRNFSTCSPSTKTCPDGHCDVVETQDINICPQDCLRGSIVGGHEPGEPRGIKAGYGTCNCFPEEEKCFCEP

The query sequence (length=553) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6q2n:E 553 553 1.0000 1.0000 1.0000 0.0 6q2n:F
2 6q2o:E 572 574 0.9964 0.9633 0.9599 0.0 6q2j:E, 6q2j:F, 6q2o:F, 6q2r:E, 6q2r:F, 6q2r:Y, 6q2r:Z, 6q2s:E, 6q2s:F, 4ux8:A, 4ux8:B
3 7aml:A 596 609 0.4412 0.4094 0.4007 1.11e-134 7amk:A, 7amk:B, 7aml:D
4 8egx:B 425 177 0.0868 0.1129 0.2712 0.002 8egw:B
5 8d40:B 427 245 0.1103 0.1429 0.2490 0.088 8d40:A
6 5tpk:A 202 89 0.0506 0.1386 0.3146 0.15
7 8egx:A 421 47 0.0362 0.0475 0.4255 0.21 8egw:A
8 3mvs:A 210 55 0.0325 0.0857 0.3273 0.30 4apx:A, 4aq8:A, 4aq8:B, 4aqa:A, 4aqe:A, 4axw:A, 6n2e:C, 6n2e:D, 7sb6:A, 7sb6:B, 7sb6:C, 2wbx:A, 2wcp:A, 2wd0:A, 2wd0:C, 2whv:A, 4xxw:C, 4xxw:D
9 5szr:A 424 79 0.0289 0.0377 0.2025 1.3 5szr:B, 5szr:C
10 6vg1:A 642 56 0.0380 0.0327 0.3750 1.4 6vg1:B
11 5v5x:D 427 79 0.0289 0.0375 0.2025 1.6 5v5x:A, 5v5x:B, 5v5x:C
12 5szn:A 523 49 0.0307 0.0325 0.3469 1.7
13 6e6b:A 633 78 0.0325 0.0284 0.2308 2.4 6e6b:B
14 5t9t:A 526 49 0.0235 0.0247 0.2653 3.0 5t9t:B
15 3d34:B 215 105 0.0542 0.1395 0.2857 3.2 3d34:A
16 4lp7:D 230 145 0.0615 0.1478 0.2345 4.3 4lp7:A, 4lp7:B, 4lp7:C
17 7u71:AAA 300 58 0.0325 0.0600 0.3103 4.6 5wj8:A
18 8tri:B 454 59 0.0362 0.0441 0.3390 5.0 7suu:A, 7suu:B, 8tri:A
19 8tri:C 419 59 0.0362 0.0477 0.3390 5.1
20 8q3b:A 1423 15 0.0181 0.0070 0.6667 6.0 8q3k:A
21 5dzw:A 417 112 0.0597 0.0791 0.2946 6.8
22 1npi:A 61 35 0.0235 0.2131 0.3714 7.3
23 7cym:B 418 44 0.0344 0.0455 0.4318 8.4 7cym:A, 7ev1:A, 7ev1:B, 6ulm:B, 6ulm:A
24 8gna:A 1188 45 0.0289 0.0135 0.3556 9.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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