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BioLiP
>protein
LVNNDLADVMFNRHSVRQFDPNVKIGRDELQKMIAEAATAPSACNLQSWHFVVVDTPEAKAKFKQAVMKFNYPQVDSASA
IVFIAGDTQSHYVYRDVWNKVYEDGNITKERLDQILGTFLPLYENATPDFLKFDATIDCSVVGMQLLLVARAHGYDANAF
SGIDFEKMIPTLGLDPKRYVPVMGIAIGKAAQEPLHTTRYDAKTQTDFLA

The query sequence (length=210) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4qlx:A 217 210 1.0000 0.9677 1.0000 5.29e-160 4qlx:B, 4qly:A, 4qly:B, 4qly:C, 4qly:D
2 3gbh:B 213 206 0.3762 0.3709 0.3835 3.46e-45 3gbh:A, 3gbh:C, 3gbh:D
3 3ge6:A 210 187 0.3333 0.3333 0.3743 1.82e-43 3ge6:B
4 3gag:A 206 196 0.2857 0.2913 0.3061 2.18e-19 3gag:B, 3gag:C, 3gag:D
5 3bem:B 210 181 0.2667 0.2667 0.3094 4.83e-18 3bem:A
6 1ds7:A 217 206 0.2619 0.2535 0.2670 1.44e-10 8c5e:A, 8c5e:B, 8c5f:A, 8c5f:B, 8c5p:A, 8c5p:B, 8ccv:A, 8ccv:B, 8cj0:A, 8cj0:B, 1ds7:B, 1icr:A, 1icr:B, 1icu:A, 1icu:B, 1icu:C, 1icu:D, 1icv:A, 1icv:B, 1icv:C, 1icv:D, 1idt:A, 1idt:B, 8og3:A, 8og3:B, 1oo5:A, 1oo5:B, 1oo6:A, 1oo6:B, 1oon:A, 1oon:B, 1ooq:A, 1ooq:B, 8qes:A, 8qes:C, 8qes:B, 8qes:D, 8qpo:A, 8qpo:B, 8qpo:C, 8qpo:G, 8qpo:D, 8qpo:E, 8qpo:F, 8qpo:H, 3x21:A, 3x21:B, 3x21:C, 3x21:D, 3x21:E, 3x21:F, 3x21:G, 3x21:H, 3x21:I, 3x21:J, 3x22:A, 3x22:B, 7x32:A, 7x32:C, 7x32:B, 7x32:H, 7x32:D, 7x32:F, 7x32:E, 7x32:G, 7xww:B, 7xww:A, 7xww:H, 7xww:I, 1yki:A, 1yki:B, 1yki:C, 1yki:D, 1ylr:A, 1ylr:B, 1ylu:A, 1ylu:B
7 1v5y:A 217 186 0.2190 0.2120 0.2473 1.32e-09 1v5y:B, 1v5z:A, 1v5z:B, 1vfr:A, 1vfr:B
8 8dor:A 217 202 0.2476 0.2396 0.2574 1.86e-09 8dor:B, 8dor:C, 8dor:D
9 5j8d:A 216 211 0.2571 0.2500 0.2559 4.59e-09 5j8d:B, 5j8d:C, 5j8d:D, 5j8g:A, 5j8g:B, 5j8g:C, 5j8g:D, 1kqb:A, 1kqb:B, 1kqb:C, 1kqb:D, 1kqc:A, 1kqc:B, 1kqc:C, 1kqc:D, 1kqd:A, 1kqd:B, 1kqd:C, 1kqd:D, 1nec:A, 1nec:B, 1nec:C, 1nec:D
10 2b67:A 201 180 0.2381 0.2488 0.2778 1.20e-08 2b67:B, 2b67:C, 2b67:D
11 3eo8:A 219 65 0.1190 0.1142 0.3846 2.48e-08 3eo8:B, 3eo8:C, 3eo8:D, 3eo8:E, 3eo8:F
12 7jh4:A 223 205 0.2286 0.2152 0.2341 4.18e-08 7jh4:B, 7jh4:C, 7jh4:D, 7jh4:E
13 8qyg:B 225 87 0.1238 0.1156 0.2989 6.01e-08 8q5g:A, 8q5g:B, 8qyg:A
14 5ko7:B 200 60 0.1190 0.1250 0.4167 5.05e-07
15 5ko8:B 218 60 0.1190 0.1147 0.4167 6.28e-07 5ko7:A, 5ko8:A, 5krd:A, 5krd:B
16 3qdl:A 178 75 0.1190 0.1404 0.3333 1.02e-06 3qdl:B, 3qdl:C, 3qdl:D
17 8cqt:B 164 93 0.1286 0.1646 0.2903 3.95e-06 8cqt:A
18 6wt2:A 221 82 0.1286 0.1222 0.3293 5.24e-06 6wt2:B, 6wt2:C, 6wt2:D
19 6czp:A 219 205 0.2286 0.2192 0.2341 1.29e-05 6czp:B, 6czp:C, 6czp:D, 6czp:E, 6czp:F, 6czp:G, 6czp:H, 7uwt:A, 7uwt:B
20 5j6c:A 173 96 0.1333 0.1618 0.2917 1.34e-05 5j6c:B
21 7s14:B 223 215 0.2238 0.2108 0.2186 1.48e-05 7ldq:A, 7rzl:A, 7rzl:B, 7rzp:A, 7rzp:B, 7s14:A, 7s14:C, 7s14:D, 7s1a:A, 7s1a:B, 7t2z:A, 7t2z:B, 7t33:A, 7t33:B
22 4eo3:A 321 69 0.1190 0.0779 0.3623 4.33e-05 4eo3:B
23 1nox:A 200 94 0.1286 0.1350 0.2872 4.46e-05
24 3gfa:A 197 59 0.0905 0.0964 0.3220 9.78e-05 3gfa:B
25 2hay:D 222 208 0.2095 0.1982 0.2115 2.61e-04 2hay:A, 2hay:B, 2hay:C
26 3ge5:A 176 87 0.1143 0.1364 0.2759 3.06e-04 3ge5:B
27 3gr3:A 226 206 0.2429 0.2257 0.2476 3.49e-04 3gr3:B
28 5j62:B 209 117 0.1429 0.1435 0.2564 4.63e-04 5j62:A
29 4ttb:A 189 63 0.0952 0.1058 0.3175 5.75e-04 4ttb:B
30 4ttc:A 220 63 0.0952 0.0909 0.3175 6.48e-04 4ttc:B, 4ttc:C, 4ttc:D, 4ttc:E, 4ttc:F, 5yak:A, 5yak:F, 5yak:B, 5yak:C, 5yak:D, 5yak:E
31 3kwk:A 168 95 0.1238 0.1548 0.2737 7.18e-04
32 2fre:A 200 181 0.2095 0.2200 0.2431 0.002 2fre:B
33 4g8s:A 182 61 0.1048 0.1209 0.3607 0.003 4g8s:B
34 3tnz:A 222 62 0.0905 0.0856 0.3065 0.003 3gfd:A, 3gfd:B, 3gh8:A, 3gh8:B, 3gh8:C, 3gh8:D, 3gh8:E, 3gh8:F, 3gh8:G, 3gh8:H, 3tnz:B
35 3ek3:A 187 51 0.0810 0.0909 0.3333 0.008
36 4dn2:A 191 58 0.0857 0.0942 0.3103 0.008 4dn2:B
37 3m5k:A 168 85 0.1048 0.1310 0.2588 0.013 3m5k:B
38 1ywq:A 199 50 0.0714 0.0754 0.3000 0.013
39 3gb5:A 185 58 0.0857 0.0973 0.3103 0.016 3to0:A, 3to0:B
40 4xoq:A 204 184 0.2381 0.2451 0.2717 0.017 4xoo:A, 4xoo:B, 4xoo:C, 4xoo:D, 4xoq:B, 4xoq:C, 4xoq:D
41 2isj:A 219 82 0.1143 0.1096 0.2927 0.049 2isj:B, 2isj:C, 2isj:D, 2isj:E, 2isj:F, 2isj:G, 2isj:H, 2isk:A, 2isk:B, 2isk:C, 2isk:D, 2isk:E, 2isk:F, 2isk:G, 2isk:H, 2isl:A, 2isl:B, 2isl:C, 2isl:D, 2isl:E, 2isl:F, 2isl:G, 2isl:H
42 3koq:A 173 96 0.1000 0.1214 0.2188 0.058 3h4o:A, 3koq:B, 3koq:C, 3koq:D
43 3bm1:A 177 59 0.0762 0.0904 0.2712 0.078 3bm1:B
44 6pz0:A 185 60 0.0857 0.0973 0.3000 0.16 6pz0:B, 6q1b:A, 6q1b:B, 6q1l:A, 6q1l:B, 6tyk:A, 6tyk:B
45 2wzv:B 223 193 0.2048 0.1928 0.2228 0.19 2wzv:A, 2wzw:A, 2wzw:B
46 2h0u:A 196 42 0.0476 0.0510 0.2381 0.20
47 8dil:A 175 165 0.1714 0.2057 0.2182 0.22 8dil:B, 8dil:C, 8dil:D, 8dil:E, 8dil:F
48 3eof:A 248 196 0.2000 0.1694 0.2143 0.25 3eof:B
49 3e10:B 167 51 0.0857 0.1078 0.3529 0.26 3e10:A
50 3pxv:B 189 220 0.2571 0.2857 0.2455 0.47 3pxv:A, 3pxv:C, 3pxv:D
51 7tmf:B 183 65 0.0762 0.0874 0.2462 0.73 7tmf:A, 7tmg:A, 7tmg:B
52 3kfl:A 530 127 0.1476 0.0585 0.2441 0.73 6swx:A
53 8uc3:A 180 35 0.0524 0.0611 0.3143 0.93 8uc3:B
54 7dp0:A 223 55 0.0857 0.0807 0.3273 1.2 7dp0:B, 7dp1:A, 7dp1:B, 7dp2:A, 7dp2:B
55 2r01:A 195 49 0.0667 0.0718 0.2857 4.1
56 7auc:A 493 149 0.1476 0.0629 0.2081 4.5
57 1esp:A 317 55 0.0714 0.0473 0.2727 5.0 1npc:A
58 1ij6:A 305 51 0.0714 0.0492 0.2941 5.9
59 5b47:B 275 25 0.0571 0.0436 0.4800 6.8
60 5b46:B 301 25 0.0571 0.0399 0.4800 6.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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