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BioLiP
>protein
LVDERMNGDGTGRPFGVNDPVLGWVLLGVFGTMWAIWFIGQKDLGDFEDADDGLKL

The query sequence (length=56) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6kac:W 56 56 1.0000 1.0000 1.0000 1.58e-34 6kac:w, 6kad:W, 6kad:w
2 7pi0:W 44 44 0.5714 0.7273 0.7273 1.59e-18 7pi0:w, 7pin:w, 7pin:W1, 7pin:w1, 7piw:W, 7piw:w1
3 3jcu:W 54 56 0.5179 0.5370 0.5179 8.98e-15 3jcu:w, 7oui:W, 7oui:w, 6yp7:W
4 8c29:w 54 56 0.4821 0.5000 0.4821 3.52e-12
5 8bd3:W 60 60 0.4286 0.4000 0.4000 2.30e-09 8bd3:w
6 6fht:B 735 24 0.2143 0.0163 0.5000 0.34 5ajg:A, 8avv:A, 8avv:B, 8avx:A, 8avx:B, 8bor:A, 8bor:B, 8bor:C, 8bor:D, 8c3i:B, 8c3i:A, 5c5k:A, 5c5k:B, 5c5k:C, 5c5k:D, 4cqh:A, 6fht:A, 6ftd:A, 6ftd:B, 4ijg:A, 5k5b:A, 5l8m:A, 5lbr:A, 5mg0:A, 5mg1:A, 5nfx:A, 5nm3:A, 5nm3:B, 5nm3:C, 5nm3:D, 5nwn:A, 5nwn:B, 5nwn:C, 5nwn:D, 4o01:A, 4o01:B, 4o01:C, 4o01:D, 4o0p:A, 4o0p:B, 4o8g:A, 2o9b:A, 2o9c:A, 4q0h:A, 4q0i:A, 4q0j:A, 3s7n:A, 3s7o:A, 3s7p:A, 3s7q:A, 8sgk:A, 8sgk:B, 6t3l:B, 6t3l:A, 6t3u:B, 6t3u:A, 4y3i:A, 4y5f:A, 4z1w:A, 7z9d:A, 7z9e:A, 4zrr:A, 1ztu:A
7 8jgj:A 684 16 0.1607 0.0132 0.5625 1.2 8jgj:B, 8jgk:A, 8jgk:B, 8jgl:A, 8jgl:B, 8jgv:A, 8jgv:B
8 8jev:A 556 16 0.1607 0.0162 0.5625 1.5 8jev:B
9 6snh:X 479 31 0.2500 0.0292 0.4516 4.6 6sni:X
10 8qby:L 659 17 0.1786 0.0152 0.5882 5.4 8qc1:L
11 2wyo:C 496 37 0.2143 0.0242 0.3243 6.1 2wyo:B, 2wyo:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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