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BioLiP
>protein
LVDDRLAGEGTGKILGINDPSLFWAITIVFTIVWGVFYVSTREIDAASDRENDDDFGLTL

The query sequence (length=60) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8bd3:W 60 60 1.0000 1.0000 1.0000 7.12e-38 8bd3:w
2 6kac:W 56 60 0.4000 0.4286 0.4000 2.46e-09 6kac:w, 6kad:W, 6kad:w
3 8c29:w 54 60 0.4167 0.4630 0.4167 3.72e-08
4 7pi0:W 44 44 0.3000 0.4091 0.4091 1.84e-07 7pi0:w, 7pin:w, 7pin:W1, 7pin:w1, 7piw:W, 7piw:w1
5 3jcu:W 54 60 0.3667 0.4074 0.3667 7.72e-07 3jcu:w, 7oui:W, 7oui:w, 6yp7:W
6 6m23:A 936 46 0.2333 0.0150 0.3043 0.12 6m23:B
7 6m1y:A 938 44 0.2500 0.0160 0.3409 0.62 6m1y:B, 6m22:A, 6m22:B
8 7air:A 885 28 0.1833 0.0124 0.3929 3.2 7aip:A, 7aip:B, 7aiq:A, 7aiq:B, 7air:B, 6kkr:A, 6kkr:B, 6kkt:A, 6kkt:B, 6kku:A, 6kku:B, 7tti:A, 7tti:B
9 7d99:A 891 34 0.1833 0.0123 0.3235 6.5 7d99:B, 6ukn:A
10 7sk8:A 306 38 0.1667 0.0327 0.2632 6.5 7sk3:A, 7sk4:A, 7sk5:A, 7sk9:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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