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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
LTPFVLFTGFEPVQVQQYIKKLYILGGEVAESAQKCTHLIASKVTRTVKFLTAISVVKHIVTPEWLEECFRCQKFIDEQN
YILRDAEAEVLFSFSLEESLKRAHVSPLFKAKYFYITPGICPSLSTMKAIVECAGGKVLSKQPSFRKLMEHKQNSSLSEI
ILISCENDLHLCREYFARGIDVHNAEFVLTGVLTQTLDYESYKFN

The query sequence (length=205) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3sqd:A 211 205 1.0000 0.9716 1.0000 1.70e-153 3sqd:B
2 3k05:B 200 201 0.3122 0.3200 0.3184 7.46e-30 2azm:A, 2azm:B, 3k05:A
3 3l41:A 214 204 0.2780 0.2664 0.2794 1.60e-22
4 7p0l:A 195 185 0.2390 0.2513 0.2649 2.68e-12 7p0l:B
5 8ir2:B 198 79 0.1122 0.1162 0.2911 4.45e-04 8ir2:A, 8ir4:A, 8ir4:B
6 3al3:A 218 78 0.0976 0.0917 0.2564 0.007 7cmz:A
7 2vxc:A 223 127 0.1463 0.1345 0.2362 0.069
8 6hm5:A 251 55 0.0878 0.0717 0.3273 0.91
9 6rml:B 278 61 0.0927 0.0683 0.3115 1.1
10 7lsy:Y 855 77 0.0878 0.0211 0.2338 3.1 6bkg:A, 4htp:A, 4htp:B, 3w1b:A, 3w1g:A, 3w5o:A, 3w5o:B
11 6iah:A 240 68 0.0927 0.0792 0.2794 3.7
12 8dku:A 395 58 0.0976 0.0506 0.3448 3.8 8dky:A, 8dky:B, 8dn8:A, 8dn8:C, 8dnc:A, 8dne:A, 8dne:C, 8dou:A, 8dou:C, 7k2t:A, 7k2t:C, 6m96:A
13 4a2r:A 247 51 0.0732 0.0607 0.2941 6.0 5an7:A, 4pa8:A, 8xyn:A, 8xyn:B
14 8esq:D 427 115 0.1268 0.0609 0.2261 9.1 8esr:D, 8eth:D, 8eup:D, 8euy:D, 8ev3:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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