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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
LSRVSLARTIGNKLKRQQLYIQAKKANSRAKHEERHRRRKEEAKNPELKQKRLEKNQPASIDKKRIWDDDSLGAVVDVAE
LKRRRLEPDSLTSQFPNLFEPPPVPKILVTTGINGTIHKEAEEIASIFPNATYIRRTAHRYAYKYSVREIAKFAKNRGYT
ALLVVQEDQKRPSRLVVVHLNGEGVPPGPTLTYTIRNYAPGKAIPGHGRATNHYPELLLNNFKTPLGLLAAKSMHILFPS
KPELAGRQVVTLHNQRDYIFFRRHRYVFREARPTEKNVVGADGKEMEGVKGIRAGLQEIGPRMTLKLRRVDKGVGRAGSE
GPDAVKWEWKAKMEKKRTRFNL

The query sequence (length=342) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8i9r:Cd 347 347 1.0000 0.9856 0.9856 0.0 8i9p:Cd, 8i9t:Cd, 8i9v:Cd
2 6c0f:I 288 336 0.3538 0.4201 0.3601 4.39e-69 6cb1:I, 6em1:x, 6em3:x, 6em4:x, 6em5:x, 7ohs:x, 7ohw:x, 7ohx:x, 8v83:x, 8v84:x, 5z3g:O
3 8eup:x 306 307 0.3772 0.4216 0.4202 1.89e-64 8esq:x, 8eth:x, 8eti:x, 8euy:x, 8ev3:x
4 8fkp:NS 305 292 0.2953 0.3311 0.3459 8.18e-41 8fkr:NS, 8fkt:NS, 8fkv:NS
5 7mq8:SM 290 240 0.2105 0.2483 0.3000 2.49e-20 7mq9:SM, 7mqa:SM
6 7ajt:CJ 282 299 0.2251 0.2730 0.2575 6.84e-17 7d4i:5G, 7d5s:5G, 7d5t:5G, 7d63:5G, 6ke6:5G, 6lqp:5G, 6lqq:5G, 6lqr:5G, 6lqs:5G, 6lqt:5G, 6lqu:5G, 6lqv:5G, 7suk:SM, 5wlc:SM, 5wyj:MB, 5wyk:MB, 6zqa:CJ, 6zqb:CJ, 6zqc:CJ, 6zqf:CJ, 6zqg:CJ
7 7aju:CJ 256 229 0.1842 0.2461 0.2751 1.12e-16 6zqd:CJ, 6zqe:CJ
8 6rxt:CK 297 232 0.1754 0.2020 0.2586 5.19e-12 5jpq:c, 5oql:b, 6rxu:CK, 6rxv:CK, 6rxx:CK, 6rxy:CK, 6rxz:CK
9 8fkp:NN 244 186 0.1491 0.2090 0.2742 1.95e-05 8fkq:NN, 8fkr:NN, 8fks:NN
10 8i9r:Cg 233 156 0.1111 0.1631 0.2436 0.032 8i9t:Cg
11 8v83:Z 253 184 0.1287 0.1739 0.2391 0.089 6c0f:v, 8v84:Z
12 3w81:A 616 47 0.0585 0.0325 0.4255 0.13 6i6r:A, 6i6r:B, 6i6x:A, 6i6x:B, 4kgj:B, 4kgj:A, 4kgl:B, 4kgl:A, 4kh2:B, 4kh2:A, 4obr:B, 4obr:A, 3w81:B, 3w82:A, 3w82:B
13 8skv:A 224 72 0.0760 0.1161 0.3611 0.65 1ow0:A, 1ow0:B
14 7w1y:6 716 33 0.0380 0.0182 0.3939 2.4 7w1y:E
15 4n8u:B 276 66 0.0702 0.0870 0.3636 3.0 4n8u:A, 4n8u:C
16 8qa8:B 202 45 0.0439 0.0743 0.3333 3.3 8qa8:A, 8qa8:C, 8qa8:D, 8qa8:E, 8qa8:F, 1r71:A, 1r71:B, 1r71:C, 1r71:D
17 8hi6:A 534 79 0.0731 0.0468 0.3165 5.7
18 5fgc:B 214 109 0.0906 0.1449 0.2844 9.9 5fgb:A, 5fgb:B, 4jzo:E, 4jzo:B, 4jzo:F, 4jzo:H

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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