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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
LSPSIVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGKTHFEAGDDRAKEYVSLLKSNDPIGFNIVDVLAWGSIGHI
VAYYILATSSNGYDPSFF

The query sequence (length=98) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7wg5:AG 99 98 1.0000 0.9899 1.0000 1.48e-68 7dkz:G, 8j6z:G, 8j7a:G, 8j7b:G, 5l8r:G, 7wfd:AG, 7wfe:BG, 7wg5:BG, 6yac:G, 6yez:G, 6zoo:G, 6zxs:G
2 3lw5:G 95 95 0.8673 0.8947 0.8947 1.48e-59 6igz:G, 2o01:G, 2wsc:G, 2wse:G, 2wsf:G, 4xk8:G, 4xk8:g
3 8wgh:G 98 98 0.8776 0.8776 0.8776 1.98e-59
4 5zji:G 97 98 0.8367 0.8454 0.8367 4.19e-58
5 8bcv:G 94 95 0.8265 0.8617 0.8526 3.97e-56
6 4y28:G 91 94 0.7959 0.8571 0.8298 1.92e-51
7 6l35:G 98 94 0.6327 0.6327 0.6596 6.21e-44 8htu:G, 7ksq:G, 7kux:G, 7xqp:G
8 4rku:G 84 89 0.7143 0.8333 0.7865 3.97e-42
9 7a4p:G 99 95 0.5306 0.5253 0.5474 5.44e-34 6zzx:G, 6zzy:G
10 7yca:G 95 87 0.4796 0.4947 0.5402 6.06e-32
11 7zq9:G 95 92 0.3980 0.4105 0.4239 2.26e-18 7d0j:G, 7dz7:G, 7dz8:G, 8h2u:G, 7zqd:G, 7zqd:G2
12 7zqc:G 80 90 0.3878 0.4750 0.4222 1.30e-16 7bgi:G, 7blx:G, 6jo5:G, 6jo6:G
13 8cmo:G 93 93 0.3265 0.3441 0.3441 1.27e-14
14 6ijo:G 70 90 0.3367 0.4714 0.3667 1.65e-13 7r3k:G
15 6sl5:G 101 94 0.3571 0.3465 0.3723 9.28e-09
16 7a4p:K 86 84 0.3163 0.3605 0.3690 4.07e-06 6zzx:K, 6zzy:K
17 8j6z:K 84 85 0.2653 0.3095 0.3059 7.83e-06 7dkz:K, 8j7b:K, 5l8r:K, 4rku:K, 6yac:K, 6yez:K, 6zoo:K, 6zxs:K
18 6igz:K 80 86 0.3061 0.3750 0.3488 1.46e-05
19 8bcv:K 88 85 0.2755 0.3068 0.3176 3.08e-05 7ew6:K, 7ewk:K, 7f9o:K, 7f9o:n, 2wse:K, 5zji:K
20 8htu:K 81 86 0.2551 0.3086 0.2907 4.39e-05 7ksq:K, 7kux:K, 6l35:K, 7xqp:K
21 8cmo:K 89 29 0.1633 0.1798 0.5517 2.85e-04
22 8wgh:K 83 86 0.2551 0.3012 0.2907 4.26e-04
23 7wfd:AK 65 29 0.1224 0.1846 0.4138 5.59e-04 7wfe:BK, 7wg5:AK, 7wg5:BK
24 7dz7:K 86 20 0.1531 0.1744 0.7500 7.01e-04 7bgi:K, 7blx:K, 7d0j:K, 7dz8:K, 6ijj:K, 6ijo:K, 7r3k:K, 7zq9:K, 7zqc:K, 7zqd:K, 7zqd:K2
25 8j7a:K 56 25 0.1122 0.1964 0.4400 0.010
26 6sl5:K 84 78 0.2551 0.2976 0.3205 0.058
27 7yca:K 87 50 0.2143 0.2414 0.4200 0.11
28 4xk8:k 46 17 0.0918 0.1957 0.5294 2.7 4xk8:K
29 8wm6:K 69 31 0.1429 0.2029 0.4516 3.0 8wmj:K, 8wmv:K, 8wmw:K
30 5xxb:K 199 35 0.1327 0.0653 0.3714 3.5
31 8b4l:C 311 18 0.0918 0.0289 0.5000 4.1 8b4l:E, 8b4l:A, 8b4l:B, 8b4l:D, 8b4l:F, 8b4m:B, 8b4m:D, 8b4m:E, 8b4m:F
32 1nt4:A 391 30 0.1122 0.0281 0.3667 4.1 1nt4:B, 6rmr:A
33 4a42:A 127 14 0.1020 0.0787 0.7143 5.2 4a42:B
34 5odn:D 106 28 0.1020 0.0943 0.3571 6.4 5odn:F, 5odn:G, 5odn:B, 5odn:C, 5odn:A, 5odn:E, 5odn:H
35 3ntl:A 388 29 0.1122 0.0284 0.3793 6.5 3ntl:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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