Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
LSPNLIGFNSNEGEKLLLTSRSREDFFPLSMQFVTQVNQAYCGVASIIMVLNSLGINAYRVFTQDNFFSTKAVIAPEVVA
RQGMTLDELGRLIASYGVKVKVNHASDTNIEDFRKQVAENLKQDGNFVIVNYLRKEIGQERGGHISPLAAYNEQTDRFLI
MDVSRYKYPPVWVKTTDLWKAMNTVDSVSQKTRGFVFVSK

The query sequence (length=200) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6tho:A 220 211 1.0000 0.9091 0.9479 2.08e-145 2btw:A, 2btw:B, 2bu3:A, 2bu3:B, 6th5:A, 6th5:B, 6tho:B, 6tjl:A, 6tjl:B
2 6qgh:A 154 77 0.1100 0.1429 0.2857 0.20 6qg8:A, 6qgg:A, 6qgj:A, 6qgk:A, 7yb7:A, 7yb7:B
3 6muk:A 363 28 0.0550 0.0303 0.3929 2.3
4 1ebd:A 455 52 0.0900 0.0396 0.3462 2.3 1ebd:B
5 5wxu:B 400 67 0.1150 0.0575 0.3433 3.0 5wxu:A, 5wxu:D, 5wxu:F, 5wxu:C, 5wxu:E
6 6w2l:B 195 102 0.1200 0.1231 0.2353 3.1 7pb1:B
7 5og1:A 819 81 0.1150 0.0281 0.2840 6.2 5ofo:C, 5ofo:F, 5ofo:E, 5ofo:D, 5ofo:B, 5ofo:A, 5og1:E, 6rn2:A, 6rn2:B, 6rn2:C, 6rn2:D, 6rn2:F, 6rn2:E, 6rn3:A, 6rn3:B, 6rn3:C, 6rn3:D, 6rn3:E, 6rn4:B, 6rn4:C, 6rn4:D, 6rn4:E
8 5j9q:E 293 103 0.1200 0.0819 0.2330 6.3 1fy7:A, 5j9q:I, 5j9q:A, 5j9w:E, 5j9w:I, 1mj9:A, 1mja:A, 1mjb:A, 3to6:A, 3to7:A, 3to9:A, 7vvu:P, 7vvz:P
9 7wao:A 502 52 0.0850 0.0339 0.3269 8.7 7waj:A, 7wak:A, 7wal:A

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218