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BioLiP
>protein
LSAIIPRSSWLAQKPMDEPLPLQLPVKYVVILHTATESSEKRAINVRLIRDMQSFHIESRGWNDIAYNFLVGCDGNIYEG
RGWKTVGAHTLGYNRISLGISFIGCFMKELPTADALNMCRNLLARGVEDGHISTDYRLICHCQCNSTESPGRRLYEEIQT
WPHFYNIEEE

The query sequence (length=170) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2cb3:C 173 170 1.0000 0.9827 1.0000 1.15e-128 2cb3:A, 2cb3:B, 2cb3:D
2 2f2l:X 166 142 0.4412 0.4518 0.5282 8.72e-49
3 2xz4:A 165 161 0.4118 0.4242 0.4348 2.82e-46
4 2aph:A 165 161 0.4118 0.4242 0.4348 8.06e-44 2aph:B, 1sk4:A, 1twq:A
5 1oht:A 173 167 0.4176 0.4104 0.4251 2.65e-41 7nsx:AAA, 7nsz:AAA, 7nt0:AAA, 7nt0:BBB
6 3cg9:A 171 165 0.4235 0.4211 0.4364 1.70e-40 6a89:B, 6a89:A, 6a89:D, 3cg9:B, 3cxa:A, 3cxa:B, 7dy5:C, 5e0b:C, 4fnn:A, 4fnn:B, 4fnn:D, 4gf9:D, 4gf9:C, 3ng4:C, 3ng4:D, 3nno:D, 3nw3:D, 3o4k:A, 3o4k:C, 3o4k:D, 3ogx:C, 3ogx:A, 4opp:A, 4opp:B, 4opp:D, 4opp:C, 4orv:D, 4oug:C, 4oug:D, 4q8s:A, 4q8s:C, 4q8s:D, 4q9e:D, 3qv4:C, 3rt4:C, 3rt4:D, 3t2v:B, 3t2v:D, 3t39:D, 3tru:D, 3usx:B, 7xfw:C, 7xfx:C, 7xfy:C, 7xfy:D, 7xu8:A, 7xu8:B
7 2eax:C 164 162 0.4059 0.4207 0.4259 7.39e-39
8 4z8i:A 224 161 0.3824 0.2902 0.4037 1.10e-38
9 2f2l:A 167 165 0.3882 0.3952 0.4000 1.75e-35
10 6srt:A 152 103 0.2118 0.2368 0.3495 7.47e-10 6ssc:A
11 6fhg:A 156 141 0.2412 0.2628 0.2908 7.11e-09 6fhg:B
12 1lba:A 146 67 0.1471 0.1712 0.3731 1.79e-08
13 6su5:A 154 129 0.2118 0.2338 0.2791 9.96e-07
14 7f5i:A 153 53 0.1353 0.1503 0.4340 6.10e-06
15 8hnw:A 809 60 0.1235 0.0260 0.3500 0.94
16 6kr4:C 575 78 0.1353 0.0400 0.2949 1.7
17 2gsy:E 433 84 0.1353 0.0531 0.2738 2.2 2df7:A, 2df7:F, 2df7:B, 2df7:C, 2df7:E, 2df7:L, 2df7:G, 2df7:K, 2df7:M, 2df7:H, 2df7:N, 2df7:O, 2df7:I, 2df7:J, 2df7:Q, 2df7:P, 2df7:R, 2df7:S, 2df7:T, 2gsy:A, 2gsy:B, 2gsy:C, 2gsy:J, 2gsy:D, 2gsy:F, 2gsy:I, 2gsy:K, 2gsy:G, 2gsy:H, 2gsy:N, 2gsy:L, 2gsy:M, 2gsy:R, 2gsy:O, 2gsy:P, 2gsy:Q, 2gsy:S, 2gsy:T

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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