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BioLiP
>protein
LQRLKFIRHARQLGFSLESIRELLSIRIDPEHHTCQESKGIVQERLQEVEARIAELQSMQRSLQRLNDACCGTAHSSVYC
SILEALEQG

The query sequence (length=89) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1q08:A 94 89 1.0000 0.9468 1.0000 4.53e-60 1q08:B, 1q09:A, 1q0a:A, 1q0a:B
2 4wlw:A 130 86 0.3933 0.2692 0.4070 9.84e-12 7c17:G, 7c17:H, 6ldi:G, 6ldi:H, 1q05:A, 1q05:B, 4wls:A, 4wls:B, 6xh7:G, 6xh7:H, 6xh8:G, 6xh8:H
3 5gpe:D 129 86 0.3596 0.2481 0.3721 4.87e-10 5gpe:A, 5gpe:B, 5gpe:C, 5gpe:E, 5gpe:F, 5gpe:G, 5gpe:H
4 6jni:A 145 87 0.3371 0.2069 0.3448 1.63e-08 6jgw:B, 6jgw:A, 6jgx:A, 6jgx:B, 6jni:B, 6jni:H, 6jni:C, 6jni:D, 6jni:E, 6jni:F, 6jni:G, 6jyw:A, 6jyw:B
5 5crl:B 119 87 0.3146 0.2353 0.3218 3.72e-08
6 4ua1:B 125 87 0.2697 0.1920 0.2759 1.03e-07 4ua1:A
7 4fai:B 305 36 0.1461 0.0426 0.3611 2.1 4fai:A, 4fbe:A, 4fbe:B
8 7nc5:A 239 73 0.2022 0.0753 0.2466 2.8 7nc5:B, 7nc5:C, 7nc5:D, 7nc5:E, 7nc5:F, 7nc6:A, 7nc6:B, 7nc6:C, 7nc6:D, 7nc6:E, 7nc6:F, 7ncu:A, 7ncu:B
9 1r8d:A 109 63 0.2022 0.1651 0.2857 4.2 1r8d:B
10 3gp4:A 132 67 0.2135 0.1439 0.2836 5.6 3gp4:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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