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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
LQPKRYKAHLMGTTYVYDFPELFRQASSSQWKNFSADVKLTDDFFISNELIEDENGELTEVEREPGANAIGMVAFKITVK
TPEYPRGRQFVVVANDITFKIGSFGPQEDEFFNKVTEYARKRGIPRIYLAANSGARIGMAEEIVPLFQVAWFQYLYLTSE
GMETLKKFDKENSVLTERTVERFVIKTIIGSEDGLGVECLRGSGLIAGATSRAYHDIFTITLVTCRSVGIGAYLVRLGQR
AIQVEGQPIILTGASALNKVLGREVYTSNLQLGGTQIMYNNGVSHLTAVDDLAGVEKIVEWMSYVPAKRNMPVPILETKD
TWDRPVDFTPTNDETYDVRWMIEGRETESGFEYGLFDKGSFFETLSGWAKGVVVGRARLGGIPLGVIGVETRTVENLIPA
DPANPNSAETLIQQAGQVWFPNSAFKTAQAINDFNNGEQLPMMILANWRGFSGGQRDMFNEVLKYGSFIVDALVDYKQPI
IIYIPPTGELRGGSWVVVDPTINADQMEMYADVNARAGVLEPEGTVEIKFRREKLLDTMNLSNKSLAPEVHQQISKQLAD
RERELLPIYGQISLQFADLHDRSSRMVAKGVISKELEWTEARRFFFWRLRRRLNEEYLIKRLSHQASRLEKIARIRSWYP
ASVDHEDDRQVATWIEENYKTLDDKLKGLKLE

The query sequence (length=672) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5csl:A 2050 688 0.9702 0.3180 0.9477 0.0
2 5csl:B 2072 683 0.9673 0.3137 0.9517 0.0 5ctb:A, 5ctb:C, 5ctc:A, 5ctc:B, 5ctc:C, 5cte:B, 5cte:C, 3h0s:A, 3k8x:A, 3k8x:B, 3k8x:C, 1od2:A, 1od2:B, 3pgq:A, 3pgq:C, 3tv5:A, 3tv5:B, 3tv5:C, 3tvu:A, 3tvu:B, 3tvu:C, 3tvw:A, 3tvw:B, 3tvw:C, 3tz3:A, 3tz3:B, 3tz3:C, 1w96:A, 1w96:B, 1w96:C, 4wyo:B, 4wyo:C, 4wz8:B, 4wz8:C
3 1uyr:A 698 688 0.9435 0.9083 0.9215 0.0 5ctb:B, 3h0j:A, 3h0j:B, 3h0j:C, 3h0q:A, 3h0q:B, 3h0q:C, 3h0s:B, 3h0s:C, 1od4:C, 3pgq:B, 1uyr:B, 1uys:A, 1uys:B, 1uys:C, 1w2x:A, 1w2x:C, 1w2x:B
4 3ff6:A 750 694 0.5506 0.4933 0.5331 0.0 3ff6:B, 3ff6:C, 3ff6:D, 3tdc:A
5 2x24:B 667 655 0.5357 0.5397 0.5496 0.0 2x24:A
6 1vrg:A 515 529 0.1682 0.2194 0.2136 8.20e-13 1vrg:B, 1vrg:C, 1vrg:D, 1vrg:E, 1vrg:F
7 7ybu:P 507 362 0.1176 0.1558 0.2182 2.95e-11 7ybu:G, 7ybu:C, 7ybu:K, 7ybu:E, 7ybu:I
8 8sgx:E 489 365 0.1295 0.1779 0.2384 4.13e-11 8sgx:F, 8sgx:G, 8sgx:H, 8sgx:C, 8sgy:C, 8sgy:E, 8sgy:G, 8sgy:D, 8sgz:C, 8sgz:D, 8sgz:E, 8sgz:F, 8sgz:G, 8sgz:H
9 8pn7:A 506 345 0.1101 0.1462 0.2145 2.05e-08 8pn7:B, 8pn7:C, 8pn7:D, 8pn7:E, 8pn7:F, 8pn8:A, 8pn8:B, 8pn8:C, 8pn8:D, 8pn8:E, 8pn8:F, 6ybp:A, 6ybp:F, 6ybq:A, 6ybq:C, 6ybq:D, 6ybq:E, 6ybq:F
10 1on3:E 520 353 0.1161 0.1500 0.2210 6.23e-08 1on3:A, 1on3:D, 1on3:B, 1on3:C, 1on3:F, 1on9:A, 1on9:B, 1on9:C, 1on9:D, 1on9:E, 1on9:F
11 3ib9:A 521 353 0.1235 0.1593 0.2351 1.99e-07 3ib9:B, 1xny:A, 1xny:B
12 3n6r:B 506 347 0.1101 0.1462 0.2133 7.79e-07 3n6r:D, 3n6r:F, 3n6r:H, 3n6r:J, 3n6r:L
13 8rth:F 542 417 0.1324 0.1642 0.2134 7.57e-05 8rth:B, 8rth:D, 8rth:L, 8rth:H, 8rth:J
14 5ini:F 511 487 0.1399 0.1840 0.1930 0.002 5inf:B, 5inf:F, 5ini:A, 5ini:D, 5ini:B, 5ini:C, 5ini:E
15 3u9s:F 537 459 0.1458 0.1825 0.2135 0.005 3u9s:B, 3u9s:L, 3u9s:D, 3u9s:H, 3u9s:J
16 8j4z:J 541 407 0.1310 0.1627 0.2162 0.010 8j4z:H, 8j4z:A, 8j4z:K, 8j4z:C, 8j4z:F, 8j78:J, 8j78:F, 8j78:D, 8j7d:C, 8j7d:G, 8j7d:J, 8j7d:E, 8jaw:B, 8jaw:D, 8jaw:I, 8jaw:G, 8jaw:J, 8jaw:L, 8jxl:B, 8jxl:A, 8jxl:D, 8jxl:K, 8jxl:G, 8jxl:I, 8jxm:K, 8jxm:A, 8jxm:E, 8jxm:J, 8jxn:K, 8jxn:G, 8jxn:I, 8jxn:A, 8k2v:H, 8k2v:I, 8k2v:J, 8k2v:G, 8k2v:K, 8k2v:L
17 2f9i:B 260 64 0.0312 0.0808 0.3281 0.014 2f9i:D, 5kdr:B
18 6cu5:A 314 93 0.0402 0.0860 0.2903 0.056 6cu5:B, 8ft7:A, 8ft7:B
19 3gma:B 566 144 0.0536 0.0636 0.2500 0.25 3gf3:A, 3glm:A, 3glm:C, 3glm:B, 3glm:D, 3gma:A
20 7lcc:A 1369 92 0.0372 0.0183 0.2717 0.29
21 4g2r:B 441 305 0.0893 0.1361 0.1967 0.34 4g2r:A, 6p7u:A, 6p7u:B, 6p7u:D, 6pk2:A, 6pk2:B, 6pk2:D, 6pk2:E, 6pk2:F, 6pk2:H, 6prw:A, 6prw:B, 6prw:D, 6prw:E, 6prw:F, 6prw:H, 6tzv:A, 6tzv:B, 6tzv:D, 6tzv:E, 6tzv:F, 6tzv:H
22 8f3d:A 566 59 0.0253 0.0300 0.2881 0.48 8f3d:B, 8f3d:C, 8f3d:D, 8f3d:E, 8f3d:F, 8f41:B, 8f41:D, 8f41:F, 8f41:A, 8f41:C, 8f41:E
23 1uf9:B 191 44 0.0268 0.0942 0.4091 1.8 1uf9:C
24 8jxm:C 520 59 0.0253 0.0327 0.2881 2.2 8j99:B, 8j99:D, 8j99:J, 8j99:G, 8j99:H, 8j99:L, 8jxm:H, 8jxn:D, 8jxn:B
25 6p7u:C 410 265 0.0744 0.1220 0.1887 2.4 6pk2:C, 6pk2:G, 6prw:C, 6prw:G, 6tzv:C, 6tzv:G
26 7ax0:A 317 72 0.0238 0.0505 0.2222 9.1 7ax2:A
27 7ax0:A 317 72 0.0238 0.0505 0.2222 9.1 7ax2:A
28 1oao:C 729 117 0.0446 0.0412 0.2564 9.3 3git:A, 3git:B, 3git:C, 3git:D, 3git:E, 3git:F, 3i01:M, 3i01:N, 3i01:O, 3i01:P, 3i04:M, 3i04:N, 3i04:O, 3i04:P, 1mjg:M, 1mjg:N, 1mjg:O, 1mjg:P, 1oao:D, 6x5k:M, 6x5k:N, 6x5k:O, 6x5k:P, 2z8y:M, 2z8y:N, 2z8y:O, 2z8y:P

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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