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BioLiP
>protein
LPTHLYKNFTVQELALKLKGKNQEFCLTAFMSGRSLVRACLSDAGHEHDTWFDTMLGFAISAYALKSRIALTVEDSPYPG
TPGDLLELQICPLNGYCE

The query sequence (length=98) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1bcp:F 98 98 1.0000 1.0000 1.0000 3.09e-71 1bcp:L
2 1bcp:C 196 77 0.1939 0.0969 0.2468 2.2 1bcp:I, 1pto:C, 1pto:I
3 1ao7:E 209 52 0.1327 0.0622 0.2500 2.7
4 7fjd:n 287 52 0.1327 0.0453 0.2500 3.7 2ak4:E, 2ak4:J, 2ak4:P, 2ak4:U, 1bd2:E, 6bj3:H, 6bj8:H, 2bnq:E, 2bnr:E, 3d39:E, 3d3v:E, 2f53:E, 2f54:E, 2f54:L, 7fje:n, 4ftv:E, 4g8g:E, 2gj6:E, 3gsn:B, 3h9s:E, 3kxf:E, 3kxf:H, 3kxf:P, 3kxf:O, 5men:E, 4mnq:E, 2p5e:E, 2p5w:E, 3pwp:E, 2pye:E, 6q3s:E, 7q9b:EEE, 7q9b:JJJ, 3qfj:E, 1qrn:E, 1qse:E, 6rpb:E, 6rpb:J, 6rpb:O, 6rpb:T, 8shi:H, 8shi:J, 7t2b:E, 7t2b:J, 7t2b:O, 7t2b:T
5 3iup:A 376 42 0.1531 0.0399 0.3571 3.7 3iup:B
6 5m7n:B 428 20 0.1224 0.0280 0.6000 3.8
7 5m7o:A 448 20 0.1224 0.0268 0.6000 3.8 4d6y:A, 4d6y:B, 5m7n:A, 5m7o:B, 5m7p:A, 5m7p:B
8 8urw:Z 1235 32 0.1122 0.0089 0.3438 5.2 8syi:Z
9 1pto:B 196 77 0.1735 0.0867 0.2208 5.6
10 4ig6:A 223 33 0.1429 0.0628 0.4242 6.6
11 5oet:B 420 21 0.0918 0.0214 0.4286 7.1
12 6z1p:As 236 34 0.1327 0.0551 0.3824 8.4
13 5wyr:B 248 24 0.1122 0.0444 0.4583 9.6 6afk:A, 6afk:B, 6jki:A, 6jki:B, 6joe:A, 6joe:B, 5wyq:A, 5wyq:B, 5wyr:A, 5zhm:A, 5zhm:B, 5zhn:A, 5zhn:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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