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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
LPSGSDPAFSQPKSVLDAGLTCQGASPSSVSKPILLVPGTGTTGPQSFDSNWIPLSTQLGYTPCWISPPPFMLNDTQVNT
EYMVNAITALYAGSGNNKLPVLTWSQGGLVAQWGLTFFPSIRSKVDRLMAFAPDYKGTVLAGPLDALAVSAPSVWQQTTG
SALTTALRNAGGLTQIVPTTNLYSATDEIVQPQVSNSPLDSSYLFNGKNVQAQAVCGPLFVIDHAGSLTSQFSYVVGRSA
LRSTTGQARSADYGITDCNPLPANDLTPEQKVAAAALLAPAAAAIVAGPKQNCEPDLMPYARPFAVGKRTCSGIVTP

The query sequence (length=317) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6isp:C 319 317 0.9811 0.9749 0.9811 0.0 5gv5:A, 5gv5:B, 5gv5:C, 5gv5:D, 5gv5:E, 5gv5:F, 5gv5:G, 5gv5:H, 6isp:D, 6isp:A, 6isp:B, 6j1t:A, 1lbs:A, 1lbs:B, 1lbs:C, 1lbs:D, 1lbs:E, 1lbs:F, 1lbt:A, 1lbt:B, 1tcb:B, 1tcc:B, 6tp8:A, 6tp8:B, 6tp8:C
2 3icw:A 291 265 0.8044 0.8763 0.9623 0.0
3 3icw:A 291 33 0.1041 0.1134 1.0000 3.44e-15
4 6idy:A 421 282 0.3091 0.2328 0.3475 8.45e-36 6idy:B, 6idy:C
5 7v6d:A 367 199 0.2492 0.2153 0.3970 4.55e-34 7v6d:B
6 7v3k:C 294 163 0.1546 0.1667 0.3006 7.55e-04 7v3k:A, 7v3k:B
7 6joo:A 834 132 0.1041 0.0396 0.2500 0.093
8 5h6b:A 252 207 0.1735 0.2183 0.2657 0.17
9 5ej4:A 556 111 0.1041 0.0594 0.2973 0.18 5ej4:B, 5ej4:C, 5ej4:D, 5ej4:E, 5ej4:F, 5ej4:G, 5ej4:H, 5ej5:A, 5ej5:B, 5ej5:C, 5ej5:D, 5ej5:E, 5ej5:F, 5ej5:G, 5ej5:H, 5ej6:A, 5ej6:B, 5ej6:C, 5ej6:D, 5ej6:E, 5ej6:F, 5ej6:G, 5ej6:H, 5ej7:A, 5ej7:B, 5ej7:C, 5ej7:D, 5ej7:E, 5ej7:F, 5ej7:G, 5ej7:H, 5ej8:A, 5ej8:B, 5ej8:C, 5ej8:D, 5ej8:E, 5ej8:F, 5ej8:G, 5ej8:H, 5ej9:A, 5ej9:B, 5ej9:C, 5ej9:D, 5ej9:E, 5ej9:F, 5ej9:G, 5ej9:H, 5eja:A, 5eja:B, 5eja:C, 5eja:D, 5eja:E, 5eja:F, 5eja:G, 5eja:H, 5ejm:A, 5ejm:B, 5ejm:C, 5ejm:D, 5ejm:E, 5ejm:F, 5ejm:G, 5ejm:H, 3hww:A, 3hwx:A, 3hwx:B, 3hwx:I, 3hwx:J, 3hwx:R, 3hwx:S, 3hwx:Z, 3hwx:1, 2jla:A, 2jla:B, 2jla:C, 2jla:D, 2jlc:A, 2jlc:B, 5z2p:A, 5z2p:B, 5z2p:C, 5z2p:D, 5z2p:E, 5z2p:G, 5z2p:F, 5z2p:H, 5z2r:A, 5z2r:B, 5z2r:C, 5z2r:D, 5z2r:E, 5z2r:F, 5z2r:G, 5z2r:H, 5z2u:A, 5z2u:H, 5z2u:B, 5z2u:G, 5z2u:C, 5z2u:D, 5z2u:E, 5z2u:F
10 3hww:D 532 111 0.1041 0.0620 0.2973 0.18
11 4po2:A 228 92 0.0726 0.1009 0.2500 1.7 4po2:B, 4wv7:A, 4wv7:B
12 1wsv:A 371 56 0.0662 0.0566 0.3750 3.1 1wsv:B
13 7ciw:A 216 27 0.0473 0.0694 0.5556 4.4 7civ:A, 7cix:A
14 2w7w:A 193 53 0.0568 0.0933 0.3396 5.3 2w7w:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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