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BioLiP
>protein
LPPITPQELESMSPQEQRAALGDRLFLKVYEIAPELAPKITGMFLEMKPKEAYELLNDQKRLEERVTEALCVLKAHQT

The query sequence (length=78) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6h7b:A 78 78 1.0000 1.0000 1.0000 1.94e-52 6h7b:C
2 1jgn:A 98 75 0.4359 0.3469 0.4533 6.52e-15 7bn3:C, 7bn3:A, 7bn3:B, 1jh4:A, 3ktp:A, 3ktr:A, 3kui:A, 3kuj:A, 3kus:A, 3kus:B, 3kut:A, 3kut:B, 3pkn:A, 3pth:A, 2rqg:B, 2rqh:B, 8smo:A, 8smo:C, 8smo:E, 8smo:G, 8smo:I, 8smo:K, 8smo:M, 8smo:O, 2x04:A, 2x04:B
3 3ntw:A 61 59 0.3205 0.4098 0.4237 8.73e-08 3ntw:C
4 2r50:C 147 43 0.2692 0.1429 0.4884 0.021 2r50:A, 2r50:B, 2r50:D
5 7z1u:A 147 20 0.1410 0.0748 0.5500 0.45 7z1u:B, 7zos:A
6 2oif:G 154 20 0.1410 0.0714 0.5500 0.58 2oif:A, 2oif:B, 2oif:C, 2oif:D, 2oif:E, 2oif:F, 2oif:H
7 3zhw:A 154 20 0.1282 0.0649 0.5000 0.93 3zhw:B
8 3qqq:A 150 20 0.1282 0.0667 0.5000 1.2 3qqq:B, 3qqr:A, 3qqr:B
9 2agw:B 361 66 0.2308 0.0499 0.2727 3.3 2agw:A, 2agx:B, 2agx:A, 2agy:B, 2agz:B, 2agz:A, 2ah0:B, 2ah0:A, 2hj4:B, 2hj4:A, 2hjb:B, 2hjb:A, 2hkr:B, 2hkr:A, 2iuq:A, 2iuq:B, 2oiz:A, 2ojy:A, 2q7q:B, 2q7q:A
10 5b43:A 1272 23 0.1154 0.0071 0.3913 3.9
11 8sfn:A 1302 23 0.1154 0.0069 0.3913 3.9 8sfh:A, 8sfl:A, 5xh6:A, 5xh7:A
12 5kk5:A 1201 23 0.1154 0.0075 0.3913 3.9
13 8sfo:A 1240 23 0.1154 0.0073 0.3913 4.0 8sfi:A, 8sfp:A, 8sfq:A, 8sfr:A
14 2dpm:A 258 42 0.1538 0.0465 0.2857 6.7
15 6kdy:D 342 20 0.1538 0.0351 0.6000 7.3 8grd:B, 8gru:B, 8gru:D, 6kdy:B, 6kdy:F
16 6f6t:B 677 29 0.1538 0.0177 0.4138 8.5 6f6t:A, 6hqf:A, 6hqf:B
17 6rgs:B 626 29 0.1538 0.0192 0.4138 8.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417