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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
LPPGPMQTLIFFDMEATGLPFSQPKVTELCLLAVHRCALESPPTVPPPPRVVDKLSLCVAPGKACSPAASEITGLSTAVL
AAHGRQCFDDNLANLLLAFLRRQPQPWCLVAHNGDRYDFPLLQAELAMLGLTSALDGAFCVDSITALKALEKSYSLGSIY
TRLYGQSPPDSHTAEGDVLALLSICQWRPQALLRWVDAHARPFGTIRPMYG

The query sequence (length=211) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8vl7:C 224 224 0.9905 0.9330 0.9330 1.83e-148 9ava:A, 9ava:B, 9ava:C, 9ava:D, 9ava:E, 9ava:F, 9ava:G, 9ava:H, 9ava:I, 9ava:J, 9ava:K, 9ava:L, 7tqq:A, 7tqq:B, 7tqq:E, 7tqq:F, 8vl7:A, 8vl7:B, 8vl7:D, 8vl7:E, 8vl7:F, 8vl7:G, 8vl7:H
2 5yws:B 234 229 0.7962 0.7179 0.7336 8.53e-107 3b6o:A, 3b6o:B, 3b6o:C, 3b6o:D, 3b6p:A, 3b6p:B, 3b6p:C, 3b6p:D, 8hcc:A, 8hcc:B, 8hcc:C, 8hcc:D, 8hcd:B, 8hcd:C, 8hcd:D, 8hcd:E, 8hce:B, 8hcf:B, 8hcg:A, 8hch:A, 8hch:B, 8hch:C, 8hch:D, 2ioc:B, 2ioc:A, 3mxi:B, 3mxi:A, 3mxm:A, 3mxm:B, 2o4g:A, 2o4g:B, 2o4g:C, 2o4g:D, 2o4i:A, 2o4i:B, 2oa8:B, 2oa8:A, 3u3y:A, 3u3y:B, 3u6f:B, 3u6f:A, 7u8y:A, 7u8y:B, 4ynq:A, 4ynq:C, 4ynq:D, 4ynq:B, 5yws:A, 5ywt:B, 5ywt:A, 5ywu:A, 5ywu:B, 5ywv:A, 5ywv:B
3 6a47:A 224 214 0.4550 0.4286 0.4486 2.04e-51 6a46:A, 6a46:B, 6a47:B, 6a4b:B, 6a4b:A, 6a4b:C, 6a4b:D, 6a4b:E, 6a4b:F
4 9b8t:A 1146 48 0.0758 0.0140 0.3333 0.084 9b8s:A, 9f6d:A, 9f6e:A, 9f6f:A, 9f6i:A, 9f6j:A, 9f6k:A, 9f6l:A
5 4ail:C 750 44 0.0900 0.0253 0.4318 0.11 2jgu:A
6 4k8x:A 759 44 0.0806 0.0224 0.3864 0.85 6is7:A, 6is7:B, 6isf:A, 6isf:B, 6isg:A, 6ish:A, 6isi:A, 4k8z:A, 5omf:A, 5omq:A, 5omv:A, 7om3:A, 7omb:A, 7omg:A, 6q4t:A, 7rsr:A, 7rss:A, 7rsu:A, 8t3x:A, 7tqw:A, 5vu6:A, 5vu7:A, 5vu9:A
7 7vqm:A 584 54 0.0900 0.0325 0.3519 0.93 7vqm:B, 7vqm:C, 7vqm:D
8 6wya:A 756 44 0.0758 0.0212 0.3636 1.8 6wyb:A
9 1d5a:A 733 44 0.0758 0.0218 0.3636 2.6
10 5why:A 418 37 0.0664 0.0335 0.3784 2.9
11 1uqw:A 487 114 0.1469 0.0637 0.2719 2.9 1uqw:B
12 1i7l:A 309 29 0.0616 0.0421 0.4483 6.2 1i7l:B
13 8yts:A 83 27 0.0569 0.1446 0.4444 7.5 8yts:B
14 6mkk:A 282 31 0.0521 0.0390 0.3548 9.3 6boq:A, 6bor:A, 6bos:A, 6bot:A, 6bou:A, 6bov:A, 6bow:A, 7cd5:A, 7cd6:A, 5cfg:A, 1de8:B, 1de8:A, 1de9:A, 1de9:B, 1dew:B, 1dew:A, 5dff:A, 5dfh:A, 5dfi:A, 5dfj:A, 5dg0:A, 4iem:A, 4iem:B, 4iem:C, 4iem:D, 2isi:A, 2isi:B, 2isi:C, 4lnd:A, 4lnd:B, 4lnd:C, 7lpg:D, 7lph:D, 7lpi:D, 7lpj:D, 7mcr:A, 7mev:A, 6p93:A, 6p94:A, 4qh9:A, 4qhe:A, 7suv:B, 7svb:B, 7tc2:A, 7tc2:B, 7tc2:C, 7tc2:D, 7tr7:A, 7u50:K, 3u8u:A, 3u8u:B, 3u8u:C, 3u8u:D, 3u8u:E, 3u8u:F, 6w0q:A, 6w2p:A, 6w3l:B, 6w3n:B, 6w3q:B, 6w3u:B, 6w43:A, 6w4i:A, 6w4i:B, 6w4t:A, 6w4t:B, 5wn0:A, 5wn1:A, 5wn2:A, 5wn3:B, 5wn4:B, 5wn5:B, 5wn5:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218