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BioLiP
>protein
LNPYSYEALKENHWLVSDSSKKNSEWTHKSNAEQLIAKVPIIYVDSNIVRCIGGTEINAGHPQVYIQLDTRKHGTPQTCK
YCGLRYAKKM

The query sequence (length=90) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8gym:s6 92 90 1.0000 0.9783 1.0000 4.81e-65 8b6f:BR, 8bqs:BR, 8gym:S6, 7tgh:S6
2 8bed:R 73 60 0.3111 0.3836 0.4667 4.29e-11 7a23:P, 7a24:P, 7aqr:R, 7ar7:R, 7ar8:R, 7arb:R, 8bpx:R, 8bq5:R, 8bq6:R, 8e73:S6, 6x89:S6
3 8q0a:R 96 58 0.2778 0.2604 0.4310 7.53e-08 7dgq:I, 7dgr:I, 7dgs:I, 7dgz:I, 7dh0:I, 7dkf:I2, 5lnk:b, 5o31:R, 8q0f:R, 8q0j:R, 8q0m:R, 8q0o:R, 8q0q:R, 8q1p:R, 8q1u:R, 8q1y:R, 8q25:R, 8q45:R, 8q46:R, 8q47:R, 8q48:R, 8q49:R, 8q4a:R, 6q9d:S6, 6qa9:S6, 6qbx:S6, 6qc2:S6, 6qc3:S6, 6qc4:S6, 6qc5:S6, 6qc6:S6, 6qc7:S6, 6qc8:S6, 7qsd:R, 7qsk:R, 7qsl:R, 7qsm:R, 7qsn:R, 7qso:R, 7r41:R, 7r42:R, 7r43:R, 7r44:R, 7r45:R, 7r46:R, 7r47:R, 7r48:R, 7r4c:R, 7r4d:R, 7r4f:R, 7r4g:R, 8ud1:1R, 8ueo:1R, 8uep:1R, 8ueq:1R, 8uer:1R, 8ues:1R, 8uet:1R, 8ueu:1R, 8uev:1R, 8uew:1R, 8uex:1R, 8uey:1R, 8uez:1R, 8ugh:1R, 8ugi:1R, 8ugj:1R, 8ugn:1R, 8ugn:5R, 8ugr:1R, 8ugr:5R, 7v2c:T, 7v2d:T, 7v2e:T, 7v2f:T, 7v2h:T, 7v2k:T, 7v2r:T, 7v30:T, 7v31:T, 7v32:T, 7v33:T, 7v3m:T, 7vb7:T, 7vbn:T, 7vbz:T, 7vwj:T, 7vxp:T, 7vxu:T, 7vy8:T, 7vya:T, 7vyf:T, 7vyh:T, 7vyn:T, 7vz1:T, 7vzv:T, 7vzw:T, 7w00:T, 7w0h:T, 7w0r:T, 7w0y:T, 7w1o:T, 7w1p:T, 7w1t:T, 7w1u:T, 7w1v:T, 7w1z:T, 7w20:T, 7w2k:T, 7w2l:T, 7w2r:T, 7w2u:T, 7w2y:T, 7w31:T, 7w32:T, 7w35:T, 7w4c:T, 7w4d:T, 7w4e:T, 7w4f:T, 7w4g:T, 7w4j:T, 7w4k:T, 7w4l:T, 7w4m:T, 7w4n:T, 7w4q:T, 7zd6:b, 7zdh:b, 7zdj:b, 7zdm:b, 7zdp:b, 7zeb:b, 6zk9:b, 6zkc:b, 6zkd:b, 6zke:b, 6zkf:b, 6zkg:b, 6zkh:b, 6zki:b, 6zkj:b, 6zkk:b, 6zkl:b, 6zkm:b, 6zkn:b, 6zko:b, 6zkp:b, 6zkq:b, 6zkr:b, 6zks:b, 6zkt:b, 6zku:b, 6zkv:b
4 7b93:R 96 57 0.2778 0.2604 0.4386 3.73e-07 7ak5:R, 7ak6:R, 8c2s:R, 8ca3:R, 6g2j:R, 6g72:R, 8iao:R, 8iap:R, 8ib4:R, 8ib5:R, 8ib9:R, 8iba:R, 8ibd:R, 8ibe:R, 8ic2:R, 8ic3:R, 8olt:R, 8om1:R, 7psa:R, 8pw5:7, 8pw6:7, 8pw7:7, 8rgp:7, 8rgq:7, 8rgr:7, 8rgt:7, 6zr2:R, 6ztq:R
5 8esw:S6 90 56 0.2889 0.2889 0.4643 2.55e-06 8b9z:R, 8ba0:R, 8esz:S6
6 7b0n:R 118 59 0.2222 0.1695 0.3390 9.22e-06 6gcs:M, 7o6y:M, 7o71:M, 6rfr:M, 6rfs:M, 6y79:M, 6yj4:R
7 5lc5:R 89 27 0.1667 0.1685 0.5556 0.011 5ldw:R, 5ldx:R
8 7arc:R 108 65 0.2222 0.1852 0.3077 0.15 7ard:R
9 7zm7:M 118 83 0.2889 0.2203 0.3133 0.39 7zmb:M, 7zmg:M
10 2vpw:A 734 34 0.1111 0.0136 0.2941 1.9 2vpw:E, 2vpx:A, 2vpx:E, 2vpy:A, 2vpy:E, 2vpz:A, 2vpz:E
11 7xgx:A 607 33 0.1444 0.0214 0.3939 2.4 7xgx:B
12 3w5k:B 110 59 0.1667 0.1364 0.2542 3.1
13 1jda:A 418 17 0.1222 0.0263 0.6471 5.0 2amg:A, 1gcy:A, 6iwk:A, 6iyg:A, 6j3x:A, 1jdc:A, 1jdd:A, 6jqb:A, 1qi3:A, 1qi4:A, 1qi5:A, 1qpk:A
14 3jq1:B 464 24 0.0889 0.0172 0.3333 5.4 3jq1:A
15 5yyc:A 368 19 0.1000 0.0245 0.4737 6.9 5yyc:C
16 4aec:A 323 23 0.1000 0.0279 0.3913 7.4 4aec:B
17 4me3:A 246 36 0.1111 0.0407 0.2778 7.8
18 7qej:A 204 32 0.1444 0.0637 0.4062 8.4 7qej:B, 7qek:A, 7qek:B
19 7ums:1 499 50 0.1778 0.0321 0.3200 8.8 7ums:3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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