Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
LNLLVIVVDANPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVIASHIQESRFLYPGLLTSANEVIVEEIK
DLMTHTETLLAGSLAKALCYIHRMNKEVMKSRILVIKAAEDSALQYMNFMNVIFAAQKQNILIDACVLDSDSGLLQQACD
ITGGLYLKVPQMPSLLQYLLWVFLPDQDQRSQLILPPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTC

The query sequence (length=237) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8bvw:5 263 256 1.0000 0.9011 0.9258 5.14e-171 7ad8:E, 8byq:5, 8ebs:F, 8ebt:F, 8ebu:F, 8ebv:F, 8ebw:F, 8ebx:F, 8eby:F, 7egb:3, 7egc:3, 7enc:3, 8gxq:HE, 8gxs:HE, 7lbm:b, 6nmi:F, 7nvr:4, 7nvw:4, 7nvx:4, 7nvy:4, 7nvz:4, 7nw0:4, 6ro4:E, 8wak:3, 8wal:3, 8wan:3, 8wao:3, 8wap:3, 8waq:3, 8war:3, 8was:3
2 7ena:3 295 278 1.0000 0.8034 0.8525 1.83e-166 6o9l:4, 6o9m:4
3 7zsb:4 306 276 0.3333 0.2582 0.2862 5.79e-33 8cen:4, 8ceo:4, 7k01:4, 7k04:4, 7m2u:4, 7o4i:4, 7o4j:4, 7o4k:4, 7o4l:4, 7o72:4, 7o73:4, 7o75:4, 7zs9:4, 7zsa:4
4 5oqj:4 297 273 0.3122 0.2492 0.2711 8.93e-28 7ml0:4, 7ml1:4, 7ml2:4, 7ml3:4, 7ml4:4, 5oqm:4
5 8cen:6 383 46 0.0591 0.0366 0.3043 0.18 8ceo:6, 7k01:6, 7k04:6, 7m2u:6, 7ml0:6, 7ml1:6, 7ml2:6, 7ml3:6, 7ml4:6, 7o4i:6, 7o4j:6, 7o4k:6, 7o4l:6, 7o72:6, 7o73:6, 7o75:6, 7zs9:6, 7zsa:6, 7zsb:6
6 6y8y:A 572 44 0.0633 0.0262 0.3409 0.47 6y8x:AA, 6y8z:A
7 6gym:6 335 42 0.0591 0.0418 0.3333 0.54 5oqj:6, 5oqm:6
8 5vj7:A 462 57 0.0591 0.0303 0.2456 1.2
9 5hvk:A 298 82 0.0970 0.0772 0.2805 2.2 8aau:L, 7ats:A, 7atu:A, 7atu:B, 7atu:C, 7atu:D, 7b8w:A, 7b8w:B, 7b8w:C, 7b8w:D, 5hvj:A, 5hvk:C, 5l6w:L, 5nxc:L, 3s95:A, 3s95:B
10 2c4i:A 242 65 0.0759 0.0744 0.2769 3.3
11 3n1c:A 309 69 0.0928 0.0712 0.3188 6.9 3cqd:A, 3cqd:B, 3n1c:D, 3n1c:B, 3n1c:C, 3umo:A, 3umo:B, 3ump:A, 3ump:B, 3uqd:A, 3uqd:C, 3uqd:B, 3uqd:D, 3uqe:A, 3uqe:B
12 6sno:A 573 26 0.0506 0.0209 0.4615 9.0 1c47:A, 1c4g:A, 5epc:A, 5epc:B, 5f9c:A, 5jn5:A, 5jn5:B, 3pmg:A, 3pmg:B, 7s0w:A, 6snp:A, 6snq:A, 5tr2:A, 5tr2:B, 6uiq:B, 6uiq:A, 6uo6:A, 6uo6:B, 5vbi:A, 5vbi:B, 5vec:A, 5vec:B, 5vg7:A, 5vg7:B, 5vin:A, 5vin:B
13 4di0:B 140 57 0.0717 0.1214 0.2982 9.9 4di0:A, 8fvv:A, 8fvv:B, 8fvv:C, 8fvv:D, 8fvv:E, 8fvv:F, 8fxd:A, 8fxd:B, 8fxd:M, 8fxd:S, 8fxd:Y, 8fxd:5

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218