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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
LNHLYMAVVADHSKRPHHHGQLDGVEAVQLNNPTCGDVISLTVKFDEDKIEDIAFAGNGCTISTASSSMMTDAVIGKSKE
EALALADIFSEMVQGQENPAQKELGEAELLAGVAKFPQRIKCSTLAWNALKEAIKR

The query sequence (length=136) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1su0:B 136 136 1.0000 1.0000 1.0000 3.43e-100
2 2azh:A 147 136 0.5074 0.4694 0.5074 7.14e-47 6jzv:A, 6jzv:B, 6jzv:C, 6jzv:D, 6jzw:A, 6jzw:B, 6jzw:C, 6jzw:D, 1xjs:A, 5xt5:D, 5xt5:C, 5xt6:D, 5xt6:C
3 2qq4:A 138 136 0.4485 0.4420 0.4485 1.15e-33 2qq4:B, 2qq4:C, 2qq4:D, 2qq4:E, 2qq4:F, 2qq4:G, 2qq4:H, 2qq4:I, 2qq4:J
4 8odq:A 150 139 0.4118 0.3733 0.4029 1.12e-31 8odq:C
5 6a6f:A 136 133 0.3603 0.3603 0.3684 1.96e-25 6a6f:B, 6a6g:C, 6a6g:D
6 4eb5:C 138 131 0.3456 0.3406 0.3588 7.54e-18 4eb5:D, 4eb7:C
7 7cnv:A 132 131 0.3235 0.3333 0.3359 2.50e-15 7c8m:A, 7c8m:C, 7c8n:A, 7c8o:D, 7c8o:B, 7cnv:B, 7cnv:C, 7cnv:D, 7cnv:E, 7cnv:F
8 1r9p:A 134 135 0.3529 0.3582 0.3556 2.08e-14
9 2z7e:B 140 136 0.3529 0.3429 0.3529 1.92e-13
10 5wlw:D 128 133 0.3309 0.3516 0.3383 1.76e-11
11 1wfz:A 130 126 0.3088 0.3231 0.3333 5.41e-09 6nzu:D, 6nzu:H, 8pk8:D, 8pk9:D, 8pka:D, 5wlw:H
12 6rtg:A 503 69 0.1618 0.0437 0.3188 3.7
13 7am2:Aj 342 24 0.0882 0.0351 0.5000 5.8 7aih:Aj, 7ane:Aj

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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