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BioLiP
>protein
LKDLKKVKVTQPQSSIVLKPVPIGEPIIWSRVQHLYWRALHVIEDFPWMGPSQTSEQFDIMLSVKEEIQKNANAAGALKD
RLLEDFEAHIKRRDWMQRRVHYFANGGPGYQTFASERHTLEQQGVWKAGTPIPFPKSDYNDDGPVEKGPYY

The query sequence (length=151) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8iuf:B9 151 151 1.0000 1.0000 1.0000 2.06e-112 8j9h:B9, 8j9i:B9, 8j9j:B9
2 1i52:A 225 49 0.1126 0.0756 0.3469 1.8 1h3m:A, 1h3m:B, 1ini:A
3 7nhk:g 97 52 0.1126 0.1753 0.3269 2.6 6o8w:f, 6o8x:f, 6o8y:f, 6o8z:f, 6o90:f, 7p7q:g, 7p7r:g, 7p7s:g, 7p7t:g, 7p7u:g, 6w6p:f, 6wub:f
4 8d40:B 427 56 0.0927 0.0328 0.2500 4.5 8d40:A
5 8cja:B 731 30 0.0795 0.0164 0.4000 5.2 8cjb:B, 8cjc:B, 8cmw:B, 7nyp:A, 7nyp:B, 7nys:A, 7nys:B, 7nz5:A, 7nz5:B, 7o0d:A, 1ru3:A, 7zkj:B, 7zkk:B, 7zkv:B
6 2bko:A 190 35 0.0861 0.0684 0.3714 7.1
7 6fh2:A 353 74 0.1523 0.0652 0.3108 7.5 6fh3:A, 6fh3:B
8 3e1z:A 109 16 0.0596 0.0826 0.5625 8.2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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