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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
LKASSLRALKLMDLSTLNGDYTDEKVIALCHQAKTPVGNTAAISIYPRSIPIARKTLKEQGTPEIRIATVTNFPHGNDDI
EIALAETRAAIAYGADEVDVVFPYRALMAGNEQVGFDLVKACKEACAAANVLLKVIIESGELKDEALIRKASEISIKAGA
DFIKTSTGLVAVNATPESARIMMEVIRDMGVEKSVGFKVTGGARTAEDAQKYLAIADELFGADWADARHYRFGASGLLAS
LLKALGH

The query sequence (length=247) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1jcj:A 252 247 0.9433 0.9246 0.9433 4.41e-152 5eky:A, 5el1:A, 5emu:A, 8for:A, 8for:B, 8for:C, 8for:D, 8for:E, 8for:F, 1jcj:B, 1jcl:A, 1jcl:B, 7p76:A, 7p76:B, 7p76:C, 7p76:D, 7p76:E, 7p76:F, 7p76:G, 7p76:H, 7p76:I, 7p76:J, 7p76:K, 7p76:L, 3q2d:A, 3q2d:B, 6z9i:B
2 3ngj:D 222 204 0.2672 0.2973 0.3235 9.80e-21 3ngj:A, 3ngj:B, 3ngj:C
3 1ub3:A 211 149 0.2186 0.2559 0.3624 2.15e-14 1ub3:B, 1ub3:C, 1ub3:D
4 3qyq:A 273 216 0.2470 0.2234 0.2824 4.41e-14 3qyq:B
5 3i4l:A 524 52 0.0769 0.0363 0.3654 0.10 3i73:A
6 5lst:A 617 46 0.0648 0.0259 0.3478 0.57
7 8onj:A 277 63 0.0810 0.0722 0.3175 0.86 8ahr:A, 8ahr:B, 8aie:A, 8aie:B, 8ayj:A, 8ayj:B, 8ayk:A, 8ayk:B, 8onj:B, 8onl:A, 8onl:B, 8onm:A, 8onm:B, 8onn:A, 8onn:B, 8onn:C, 8onn:D
8 5xhu:A 329 31 0.0526 0.0395 0.4194 2.4
9 1rm6:A 761 47 0.0648 0.0210 0.3404 4.5 1rm6:D, 1sb3:A, 1sb3:D
10 3al0:C 564 98 0.1053 0.0461 0.2653 5.3 3afh:A, 3akz:B, 3akz:D, 3akz:C, 3akz:A
11 4hnn:F 320 62 0.0729 0.0563 0.2903 5.7 4hnn:A, 4hnn:B, 4hnn:C, 4hnn:D, 4hnn:E, 4hnn:G, 4hnn:H
12 5ey5:A 261 70 0.0810 0.0766 0.2857 6.9 5ey5:C
13 3d8n:A 250 77 0.0850 0.0840 0.2727 8.1
14 6xfr:B 216 51 0.0607 0.0694 0.2941 8.9 6xfr:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218