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BioLiP
>protein
LENLTTRELLAVSRASLRELKRRGVIRSGNAPAGDYAELLVQRATDGELANASQKSWDIRTTEGDRLQVKARVITDEHAN
GERQLSTIRSWDFDAAVIVLFDDNFRVWRAARVPAAIMKEAAYYSQHVRGYTVYAKDALLNHSEVEDWTEQLRSVEQ

The query sequence (length=157) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8rpx:D 168 156 0.9936 0.9286 1.0000 1.55e-112 8q5n:A, 8q5n:B, 8rpx:A, 8rpx:B, 8rpx:C, 8rpx:E
2 8q5o:B 151 132 0.3121 0.3245 0.3712 1.99e-22 8q5o:A
3 2hji:A 156 59 0.1083 0.1090 0.2881 1.8
4 7ane:ad 694 36 0.0828 0.0187 0.3611 3.5
5 1qtw:A 285 57 0.1146 0.0632 0.3158 3.6 4k1g:A, 4k1g:B, 2nq9:A, 2nqh:A, 2nqj:A, 2nqj:B, 1qum:A
6 1kcg:C 170 61 0.1338 0.1235 0.3443 5.6
7 8h3v:A 1077 82 0.1656 0.0241 0.3171 6.7 8h40:A
8 8kgn:A 1190 68 0.1146 0.0151 0.2647 8.1 8j9v:A, 8j9v:B, 8j9w:B, 8j9w:A, 8j9x:A, 8j9x:B, 8ja1:A, 8ja2:A, 8kgm:A, 8kgm:B, 8kgn:B, 8kgq:A, 8kgq:B, 8kgr:A, 8kgr:B, 8kgs:A, 8kgt:A, 8wwo:A, 8wwo:B, 8wwo:C, 8wwo:D, 8xrf:A, 8xrf:B, 8xrg:A, 8xrh:A, 8xri:A, 8xri:B, 8yge:A, 8yge:B
9 7aor:ad 801 35 0.0828 0.0162 0.3714 8.7
10 6lrl:B 316 30 0.0828 0.0411 0.4333 9.5 8ime:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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