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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
LEELREYQRRKRTEYEGYLKRNRLDMGQWIRYAQFEIEQHDMRRARSIFERALLVDSSFIPLWIRYIDAELKVKCINHAR
NLMNRAISTLPRVDKLWYKYLIVEESLNNVEIVRSLYTKWCSLEPGVNAWNSFVDFEIRQKNWNGVREIYSKYVMAHPQM
QTWLKWVRFENRHGNTEFTRSVYSLAIDTVANLQNLQIWSDMEVAKLVNSFAHWEAAQQEYERSSALYQIAIEKWPAAAA
AAAAAAAAAAAGAAAAGAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAGAAAGAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAGAA

The query sequence (length=545) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5gmk:d 549 545 1.0000 0.9927 1.0000 0.0 5gm6:d, 5wsg:d
2 6j6g:d 566 243 0.4349 0.4187 0.9753 0.0 7b9v:S, 6j6h:d, 6j6n:d, 6j6q:d, 5lqw:R
3 7dco:J 554 259 0.4349 0.4278 0.9151 0.0 5y88:I
4 5ylz:I 517 259 0.4349 0.4584 0.9151 0.0
5 6bk8:T 483 243 0.4349 0.4907 0.9753 0.0 6exn:S, 5lj3:S, 5lj5:S, 5mps:S, 5mq0:S
6 3jb9:R 575 275 0.2165 0.2052 0.4291 8.56e-58
7 8c6j:S 635 233 0.1688 0.1449 0.3948 7.03e-48 7abi:O, 8ch6:X, 6ff4:O, 8i0r:J, 8i0s:J, 8i0t:J, 5mqf:O, 7qtt:X, 6zym:O
8 8c6j:S 635 177 0.0899 0.0772 0.2768 0.007 7abi:O, 8ch6:X, 6ff4:O, 8i0r:J, 8i0s:J, 8i0t:J, 5mqf:O, 7qtt:X, 6zym:O
9 8c6j:S 635 97 0.0587 0.0504 0.3299 0.23 7abi:O, 8ch6:X, 6ff4:O, 8i0r:J, 8i0s:J, 8i0t:J, 5mqf:O, 7qtt:X, 6zym:O
10 8c6j:S 635 104 0.0532 0.0457 0.2788 1.5 7abi:O, 8ch6:X, 6ff4:O, 8i0r:J, 8i0s:J, 8i0t:J, 5mqf:O, 7qtt:X, 6zym:O
11 8i0w:J 571 233 0.1688 0.1611 0.3948 7.30e-48 7dvq:J, 8i0u:J, 8i0v:J, 6icz:J, 6id0:J, 6id1:J, 6qdv:S, 7w59:J, 7w5a:J, 7w5b:J, 5xjc:J, 5yzg:J, 5z56:J, 5z57:J, 5z58:J
12 8ro0:J 574 237 0.1523 0.1446 0.3502 6.95e-40 8ro1:J
13 8ro0:J 574 121 0.0642 0.0610 0.2893 0.24 8ro1:J
14 7d5s:RD 265 70 0.0459 0.0943 0.3571 0.015 6lqu:RD, 7suk:NJ, 5wlc:NJ
15 8ro2:I 753 102 0.0514 0.0372 0.2745 0.24
16 8ro2:I 753 42 0.0312 0.0226 0.4048 5.2
17 8dk3:A 455 72 0.0495 0.0593 0.3750 1.1 8dk3:B
18 5zwn:U 583 152 0.0697 0.0652 0.2500 5.1 7oqc:D, 7oqe:D
19 5oql:E 331 48 0.0330 0.0544 0.3750 8.0 6rxt:UF, 6rxu:UF, 6rxv:UF, 6rxy:UF, 6rxz:UF
20 7suk:LP 359 59 0.0367 0.0557 0.3390 8.7 5wlc:LP
21 3ea1:A 296 50 0.0312 0.0574 0.3400 9.0 3ea1:B, 3ea2:A, 3ea2:B, 3ea3:A, 3ea3:B, 1gym:A, 1ptg:A, 6s2a:A, 6s2a:B, 6s2a:C, 1t6m:A, 1t6m:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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