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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
LDRLDAALRFQQEALNLRAQRQEILAANIANADTPGYQARDIDFASELKKVMVRAVDLLYRVPDQPSLDGNTVDMDRERT
QFADNSLKYQMGLTVLGSQLKGMMNVLQ

The query sequence (length=108) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7cg0:m 106 107 0.9815 1.0000 0.9907 6.65e-72 7cg0:l, 7cgo:m, 7cgo:l, 7e80:m, 7e80:l, 7e82:m, 7e82:l, 8wk3:U, 8wkk:U, 8wlh:U, 8wlq:U
2 8wk3:Q 119 118 0.9907 0.8992 0.9068 5.02e-71 7cg0:k, 7cg0:n, 7cg0:o, 7cgo:k, 7cgo:n, 7cgo:o, 7e80:k, 7e80:n, 7e80:o, 7e82:k, 7e82:n, 7e82:o, 8wk3:R, 8wk3:S, 8wk3:T, 8wkk:Q, 8wkk:R, 8wkk:S, 8wkk:T, 8wlh:Q, 8wlh:R, 8wlh:S, 8wlh:T, 8wlq:Q, 8wlq:R, 8wlq:S, 8wlq:T
3 8wkq:Q 134 133 0.9907 0.7985 0.8045 3.49e-69 8wkq:R, 8wkq:S, 8wkq:T, 8wkq:U, 8wl2:A6, 8wl2:A7, 8wl2:A8, 8wl2:A9, 8wl2:A0, 8wln:Q, 8wln:R, 8wln:S, 8wln:T, 8wln:U, 8wlt:A6, 8wlt:A7, 8wlt:A8, 8wlt:A9, 8wlt:A0, 8wo5:A6, 8wo5:A7, 8wo5:A8, 8wo5:A9, 8wo5:A0, 8woe:A6, 8woe:A7, 8woe:A8, 8woe:A9, 8woe:A0
4 3t3o:A 553 32 0.1204 0.0235 0.4062 0.085 3bk1:A, 3bk2:A, 3t3n:A
5 8wk3:o 250 59 0.1667 0.0720 0.3051 0.66 7cgo:b, 7cgo:e, 7cgo:a, 7cgo:c, 7cgo:d, 7e80:b, 7e80:e, 7e80:a, 7e80:c, 7e80:d, 7e82:b, 7e82:e, 7e82:a, 7e82:c, 7e82:d, 8wk3:m, 8wk3:n, 8wk3:p, 8wk3:q, 8wkk:m, 8wkk:n, 8wkk:o, 8wkk:p, 8wkk:q, 8wl2:AA, 8wl2:AB, 8wl2:AC, 8wl2:AD, 8wl2:AE, 8wlh:m, 8wlh:n, 8wlh:o, 8wlh:q, 8wlq:m, 8wlq:n, 8wlq:o, 8wlq:q, 8wlt:AA, 8wlt:AB, 8wlt:AC, 8wlt:AE, 8wo5:AA, 8wo5:AB, 8wo5:AC, 8wo5:AE, 8woe:AA, 8woe:AB, 8woe:AC, 8woe:AD, 8woe:AE
6 6ah7:A 439 25 0.1019 0.0251 0.4400 0.75 6ah7:B, 6ah7:C, 6ah7:D, 6ah8:A, 6ah8:B, 6ah8:C, 6ah8:D, 7e5c:A, 7e5c:B, 7e5c:C, 7e5c:D
7 5xxm:A 749 67 0.2130 0.0307 0.3433 3.3 5xxl:A, 5xxl:B, 5xxm:B, 5xxn:A, 5xxn:B, 5xxo:B, 5xxo:A
8 3bnk:B 187 30 0.0926 0.0535 0.3333 5.5 3bnk:A
9 5a0t:A 454 55 0.1481 0.0352 0.2909 6.6 5a0t:B, 5a0v:A, 5a0v:B
10 6bxn:A 294 52 0.1204 0.0442 0.2500 6.7
11 6bxo:A 321 51 0.1204 0.0405 0.2549 6.8 6bxm:A, 6bxm:B, 6bxn:B, 6bxo:B
12 2qll:A 806 61 0.1667 0.0223 0.2951 8.5 1em6:A, 1em6:B, 1exv:A, 1exv:B
13 8wk3:V 133 119 0.2778 0.2256 0.2521 8.7 7cg0:h, 7cg0:f, 7cg0:i, 7cg0:j, 7cg0:p, 7cgo:h, 7cgo:f, 7cgo:i, 7cgo:j, 7cgo:p, 7e80:h, 7e80:f, 7e80:i, 7e80:j, 7e80:p, 7e82:h, 7e82:f, 7e82:i, 7e82:j, 7e82:p, 8wk3:W, 8wk3:X, 8wk3:Y, 8wk3:Z, 8wk3:a, 8wkk:V, 8wkk:a, 8wkk:W, 8wkk:X, 8wkk:Y, 8wkk:Z, 8wkq:V, 8wkq:a, 8wkq:W, 8wkq:X, 8wkq:Y, 8wkq:Z, 8wl2:BA, 8wl2:BF, 8wl2:BB, 8wl2:BC, 8wl2:BD, 8wl2:BE, 8wlh:V, 8wlh:a, 8wlh:W, 8wlh:X, 8wlh:Y, 8wlh:Z, 8wln:V, 8wln:a, 8wln:W, 8wln:X, 8wln:Y, 8wln:Z, 8wlq:V, 8wlq:a, 8wlq:W, 8wlq:X, 8wlq:Y, 8wlq:Z, 8wlt:BA, 8wlt:BF, 8wlt:BB, 8wlt:BC, 8wlt:BD, 8wlt:BE, 8wo5:BA, 8wo5:BF, 8wo5:BB, 8wo5:BC, 8wo5:BD, 8wo5:BE, 8woe:BA, 8woe:BF, 8woe:BB, 8woe:BC, 8woe:BD, 8woe:BE
14 3gtg:C 271 58 0.1389 0.0554 0.2586 9.1 4a3b:C, 4a3c:C, 4a3d:C, 4a3e:C, 4a3f:C, 4a3g:C, 4a3i:C, 4a3j:C, 4a3k:C, 4a3l:C, 4a3m:C, 4a93:C, 2b63:C, 2b8k:C, 4bbr:C, 4bbs:C, 6blo:C, 6blp:C, 6bm2:C, 6bm4:C, 6bqf:C, 4bxx:C, 4bxz:C, 4by1:C, 4by7:C, 5c3e:C, 5c4a:C, 5c4j:C, 5c4x:C, 8cen:C, 8ceo:C, 3cqz:C, 2e2h:C, 2e2i:C, 2e2j:C, 3fki:C, 5fmf:C, 5fyw:C, 5fz5:C, 3gtj:C, 3gtk:C, 3gtl:C, 3gtm:C, 3gto:C, 3gtp:C, 3gtq:C, 6gyk:C, 6gyl:C, 6gym:C, 3h3v:D, 3hou:C, 3hou:O, 3hov:C, 3how:C, 3hox:C, 3hoy:C, 3hoz:C, 1i3q:C, 3i4m:C, 3i4n:C, 1i50:C, 1i6h:C, 6i84:C, 5ip7:C, 5ip9:C, 3j0k:C, 2ja5:C, 2ja6:C, 2ja7:C, 2ja7:O, 2ja8:C, 9ja1:C, 8jch:C, 3k1f:C, 8k5p:C, 3k7a:C, 1k83:C, 7ked:C, 7kee:C, 7kef:C, 3m3y:C, 3m4o:C, 7mei:c, 7mei:C, 7mk9:C, 7mka:c, 7ml0:C, 7ml1:C, 7ml2:C, 7ml4:C, 1nik:C, 7nkx:C, 2nvq:C, 2nvt:C, 2nvx:C, 2nvy:C, 2nvz:C, 7o4i:C, 7o4j:C, 6o6c:C, 7o72:C, 7o73:C, 7o75:C, 5oqj:C, 5oqm:C, 5ot2:C, 3po2:C, 3po3:C, 3qt1:C, 1r5u:C, 2r7z:C, 1r9s:C, 1r9t:C, 2r92:C, 2r93:C, 7rim:C, 7rip:C, 7riq:C, 7riw:C, 7rix:C, 7riy:C, 3rzd:C, 3rzo:C, 3s14:C, 3s15:C, 3s16:C, 3s17:C, 3s1m:C, 3s1n:C, 3s1q:C, 3s1r:C, 3s2d:C, 3s2h:C, 1sfo:C, 5sva:C, 8tug:C, 8tvp:C, 8tvq:C, 8tvs:C, 8tvv:C, 8tvw:C, 8tvx:C, 8tvy:C, 1twa:C, 1twc:C, 1twf:C, 1twg:C, 1twh:C, 5u5q:C, 8u9r:C, 8u9x:C, 8ukq:C, 8ukr:C, 8uks:C, 8ukt:C, 8uku:C, 6upx:C, 6upy:C, 6upz:C, 6uq0:C, 6uq1:C, 6uq2:C, 6uq3:C, 4v1m:C, 4v1n:C, 4v1o:C, 2vum:C, 5vvr:C, 5vvs:C, 5w4u:C, 5w51:C, 1wcm:C, 4x67:C, 4x6a:C, 1y1v:C, 1y1w:C, 4y52:C, 1y77:C, 4y7n:C, 2yu9:C, 7zs9:C, 7zsa:C, 7zsb:C
15 7buj:B 362 32 0.1204 0.0359 0.4062 9.7 7a08:a, 7buj:A, 7bum:A, 7bum:B, 7buq:A, 7buq:B, 8eae:A, 8eae:C, 8ecc:A, 8ecc:C, 8g10:A, 8g10:C, 8g1j:A, 8g1j:C, 8g23:A, 8g23:C, 8g2p:A, 8g2p:C, 8g2q:A, 8g2q:C, 8gim:A, 8gim:C, 8gin:A, 8gin:C, 8gio:A, 8gio:C, 8gip:A, 8gip:C, 8gir:A, 8gir:C, 8gis:A, 8gis:C, 8git:A, 8git:C, 7jo9:K, 7joa:K, 4k8v:C, 4k8v:A, 4k8v:B, 4k8v:D, 4k96:A, 4k96:B, 4k97:A, 4k98:A, 4k99:A, 4k9a:A, 4k9b:A, 7kxs:A, 7kxs:B, 4ley:A, 4ley:C, 4ley:B, 4ley:D, 4lez:A, 4lez:C, 7lz3:A, 5n6i:A, 5n6i:B, 5n6i:C, 5n6i:D, 5n6i:E, 5n6i:F, 4o6a:A, 4o6a:B, 8shk:C, 8shu:C, 8shy:C, 8sj0:A, 8sj0:C, 8sj1:A, 8sj1:C, 8sj2:A, 8sj2:C, 8skt:A, 8skt:C, 7utt:A, 7utt:C, 7uux:A, 7uux:C, 7uxw:A, 7uxw:C, 7uyq:A, 7uyq:C, 7uyz:A, 7uyz:C, 7uzr:A, 7uzr:C, 7v0c:A, 7v0c:C, 7v0r:A, 7v0r:C, 7v0w:A, 7v0w:C, 6x59:K, 6xjd:K, 6xjd:L, 5xzb:A, 5xze:A, 5xzg:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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