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BioLiP
>protein
LDPQIVISGSTAAFLAIGRFVFLGYQRREANFATNDPAGFNIIDVAGWGALGHAVGFAVLAINSLQG

The query sequence (length=67) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6ijo:G 70 67 0.9552 0.9143 0.9552 1.82e-40 7r3k:G
2 7zqc:G 80 76 1.0000 0.8375 0.8816 2.36e-40 7bgi:G, 7blx:G, 6jo5:G, 6jo6:G
3 7zq9:G 95 91 1.0000 0.7053 0.7363 5.27e-38 7d0j:G, 7dz7:G, 7dz8:G, 8h2u:G, 7zqd:G, 7zqd:G2
4 8cmo:G 93 92 0.5970 0.4301 0.4348 5.60e-18
5 7yca:G 95 91 0.5821 0.4105 0.4286 3.25e-16
6 7a4p:G 99 90 0.5522 0.3737 0.4111 5.08e-15 6zzx:G, 6zzy:G
7 8bcv:G 94 89 0.5224 0.3723 0.3933 2.12e-14
8 6l35:G 98 83 0.5224 0.3571 0.4217 1.11e-13 8htu:G, 7ksq:G, 7kux:G, 7xqp:G
9 8wgh:G 98 89 0.4776 0.3265 0.3596 2.18e-13
10 7wg5:AG 99 90 0.5224 0.3535 0.3889 3.06e-13 7dkz:G, 8j6z:G, 8j7a:G, 8j7b:G, 5l8r:G, 7wfd:AG, 7wfe:BG, 7wg5:BG, 6yac:G, 6yez:G, 6zoo:G, 6zxs:G
11 5zji:G 97 89 0.5075 0.3505 0.3820 2.75e-12
12 3lw5:G 95 85 0.4776 0.3368 0.3765 1.12e-11 6igz:G, 2o01:G, 2wsc:G, 2wse:G, 2wsf:G, 4xk8:G, 4xk8:g
13 6sl5:G 101 96 0.5224 0.3465 0.3646 2.70e-11
14 4y28:G 91 85 0.4328 0.3187 0.3412 1.51e-07
15 8cmo:K 89 70 0.3433 0.2584 0.3286 3.55e-06
16 7a4p:K 86 34 0.2388 0.1860 0.4706 4.30e-06 6zzx:K, 6zzy:K
17 6igz:K 80 69 0.3134 0.2625 0.3043 2.41e-05
18 8wgh:K 83 68 0.3284 0.2651 0.3235 3.93e-05
19 4rku:G 84 77 0.3582 0.2857 0.3117 4.41e-05
20 7dz7:K 86 35 0.2239 0.1744 0.4286 4.72e-05 7bgi:K, 7blx:K, 7d0j:K, 7dz8:K, 6ijj:K, 6ijo:K, 7r3k:K, 7zq9:K, 7zqc:K, 7zqd:K, 7zqd:K2
21 8bcv:K 88 38 0.2090 0.1591 0.3684 1.39e-04 7ew6:K, 7ewk:K, 7f9o:K, 7f9o:n, 2wse:K, 5zji:K
22 8htu:K 81 68 0.3134 0.2593 0.3088 1.49e-04 7ksq:K, 7kux:K, 6l35:K, 7xqp:K
23 8j6z:K 84 68 0.2985 0.2381 0.2941 4.32e-04 7dkz:K, 8j7b:K, 5l8r:K, 4rku:K, 6yac:K, 6yez:K, 6zoo:K, 6zxs:K
24 7wfd:AK 65 57 0.2687 0.2769 0.3158 0.008 7wfe:BK, 7wg5:AK, 7wg5:BK
25 8j7a:K 56 57 0.2537 0.3036 0.2982 0.073
26 6sl5:K 84 31 0.2090 0.1667 0.4516 0.45
27 8grv:A 336 55 0.2388 0.0476 0.2909 1.8
28 7b2e:A 548 19 0.1493 0.0182 0.5263 2.6 7ayg:A, 7ayg:B, 7ayg:C, 7ayg:D, 7ayg:E, 7ayg:F, 7ayg:G, 7ayg:H, 7b2e:B, 7b2e:C, 7b2e:D, 7b2e:E, 7b2e:F, 7b2e:G, 7b2e:H
29 8h6s:A 306 33 0.1642 0.0359 0.3333 5.3 5czc:A, 5czd:A, 7f2r:A, 7f2r:C, 8h6s:B
30 5mt0:A 230 19 0.1493 0.0435 0.5263 5.6 1bio:A, 4d9q:A, 8d95:A, 8dea:A, 8dea:B, 8dea:C, 8dea:D, 1dfp:A, 1dfp:B, 8dg6:A, 1dic:A, 5fbe:A, 5fbi:A, 5fck:A, 6fty:A, 6ftz:A, 6fug:A, 6fug:B, 6fug:C, 6fug:D, 6fug:E, 6fug:F, 6fuh:A, 6fui:A, 6fuj:A, 6fuj:B, 6fuj:C, 6fut:A, 5mt4:A, 5nar:A, 5nat:A, 5naw:A, 5nb6:A, 5nb7:A, 5nba:A, 6qmr:A, 6qmr:B, 6qmr:C, 6qmr:D, 6qmr:E, 6qmr:F, 6qmt:A, 6qmt:B, 5tca:A, 5tca:C, 5tca:B, 5tca:D, 5tca:E, 5tca:F, 5tca:G, 5tcc:A, 5tcc:C, 5tcc:B, 5tcc:D, 5tcc:E, 5tcc:F, 5tcc:G
31 3c7a:A 403 24 0.1493 0.0248 0.4167 5.8 3c7c:B, 3c7d:B, 3iqd:B
32 7zm7:A 711 34 0.1642 0.0155 0.3235 6.8 7zmb:A, 7zmg:A
33 8ujg:A 530 23 0.1642 0.0208 0.4783 6.9 8uhz:A, 8ui1:A, 8ui6:A, 8uje:A, 8ujf:A, 8ujf:B, 8ujg:B, 8ujh:A
34 7r41:d 113 42 0.1940 0.1150 0.3095 7.5 7r42:d, 7r44:d, 7r45:d, 7r47:d, 7r48:d, 7r4c:d, 7r4d:d, 7r4f:d, 7r4g:d

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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