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BioLiP
>protein
LDPKLCYLLDGILFIYGVILTALFLRVKFS

The query sequence (length=30) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7phr:Z 34 29 0.9667 0.8529 1.0000 3.78e-14 9ci8:b, 8es7:Y, 8es8:Y, 8es9:Y, 7fjd:a, 7fje:a, 7fjf:a, 8jc0:a, 8jcb:A, 8jcb:a, 8wy0:b, 8wyi:a
2 3pbk:A 555 22 0.3333 0.0180 0.4545 4.2 3pbk:B
3 9cpo:A 930 19 0.3333 0.0108 0.5263 4.4
4 6dsz:B 1072 27 0.4333 0.0121 0.4815 6.8
5 7dlk:A 363 15 0.3000 0.0248 0.6000 7.9 7dlk:B, 7dlk:C, 7dlk:D, 7dlk:E, 7dlk:F, 7e5q:A, 7e5q:B, 6kmm:A, 6kmm:B, 6kmm:C, 6kmm:D, 6kmm:E, 6kmm:F, 6kmn:A, 6kmn:B, 6kmn:C, 6kmn:D, 7pkx:A, 7pkx:B, 7pl0:A, 7pl0:B, 7pl0:C, 7pl0:D
6 7eto:a 1297 24 0.3000 0.0069 0.3750 8.7 7et3:a, 7etj:a
7 7xlq:A 1319 27 0.3000 0.0068 0.3333 8.8 8epl:A, 7yg5:A
8 8hey:D 1270 24 0.3000 0.0071 0.3750 9.2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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