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BioLiP
>protein
LCTHSLPKEKMPYLLRSGEGERYLFGRQVATVMANGRSTGDLFEIVLLSGGKGDAFPLHVHKDTHEGILVLDGKLELTLD
GERYLLISGDYANIPAGTPHSYRMQSHRTRLVSYTMKGNVAHLYSVIGNPYDHAEHPPYASEEVSNERFAEAAAVATIVF
LDEAKPACSAKLAELTELPDGAVPYVLESGEGDRLLTGDQLHRIVAAQKNTDGQFIVLSSEGPKGDRVVDHYHEYCTETF
YCLEGQMTMWTDGQEIQLNPGDFLHAPANTVHSYRLDSHYTKFVGVVVPGLFEPFFRTLGDPYEGHIFPCALDLKVMKP

The query sequence (length=319) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2h0v:A 335 334 0.9781 0.9313 0.9341 0.0 2h0v:B, 8hfb:A, 8hfb:B, 1y3t:A, 1y3t:B
2 5flh:A 190 133 0.1536 0.2579 0.3684 1.19e-19 5flh:B, 5fli:A, 5fli:B, 5fli:C, 5fli:D, 5fli:E, 5fli:F, 5fli:G, 5fli:H, 5fli:I, 5fli:J, 5fli:K, 5fli:L, 5flj:A, 5flj:B, 5flj:C, 5flj:D, 5flj:E, 5flj:F, 5flj:G, 5flj:H, 5flj:I, 5flj:J, 5flj:K, 5flj:L
3 5flh:A 190 132 0.1317 0.2211 0.3182 2.46e-14 5flh:B, 5fli:A, 5fli:B, 5fli:C, 5fli:D, 5fli:E, 5fli:F, 5fli:G, 5fli:H, 5fli:I, 5fli:J, 5fli:K, 5fli:L, 5flj:A, 5flj:B, 5flj:C, 5flj:D, 5flj:E, 5flj:F, 5flj:G, 5flj:H, 5flj:I, 5flj:J, 5flj:K, 5flj:L
4 1h1i:B 346 132 0.1348 0.1243 0.3258 4.98e-13 1gqg:A, 1gqg:B, 1gqg:C, 1gqg:D, 1gqh:A, 1gqh:B, 1gqh:C, 1gqh:D, 1h1i:A, 1h1i:C, 1h1i:D, 1h1m:A, 1h1m:B, 1h1m:C, 1h1m:D, 1juh:A, 1juh:B, 1juh:C, 1juh:D
5 1h1i:B 346 230 0.1505 0.1387 0.2087 0.001 1gqg:A, 1gqg:B, 1gqg:C, 1gqg:D, 1gqh:A, 1gqh:B, 1gqh:C, 1gqh:D, 1h1i:A, 1h1i:C, 1h1i:D, 1h1m:A, 1h1m:B, 1h1m:C, 1h1m:D, 1juh:A, 1juh:B, 1juh:C, 1juh:D
6 7zvm:A 104 61 0.0627 0.1923 0.3279 0.005
7 7zvy:A 112 61 0.0627 0.1786 0.3279 0.008
8 6b8w:B 95 68 0.0658 0.2211 0.3088 0.009
9 5e1r:C 358 281 0.2163 0.1927 0.2456 0.023 5e1r:A, 5e1r:B, 5e1r:D, 5e1r:E, 5e1r:F
10 3cew:A 118 96 0.1003 0.2712 0.3333 0.086 3cew:B, 3cew:C, 3cew:D
11 3cew:A 118 34 0.0376 0.1017 0.3529 2.3 3cew:B, 3cew:C, 3cew:D
12 5fq0:C 109 42 0.0439 0.1284 0.3333 0.16
13 4amc:A 1019 83 0.0721 0.0226 0.2771 0.32
14 2vqa:A 356 56 0.0596 0.0534 0.3393 0.74 2vqa:B, 2vqa:C
15 3gbf:A 415 50 0.0564 0.0434 0.3600 1.4
16 5zbf:A 210 94 0.0784 0.1190 0.2660 1.6 5zbe:A
17 6j4b:A 123 29 0.0376 0.0976 0.4138 1.8 6j4c:A, 6jtf:A
18 1o4t:A 115 51 0.0470 0.1304 0.2941 2.0 1o4t:B
19 6rrp:B 450 66 0.0564 0.0400 0.2727 2.0
20 7eqk:A 119 67 0.0752 0.2017 0.3582 2.3 7eqk:B, 7eu6:A, 7eu6:B, 7eue:A, 7eue:B, 7eup:A, 7eup:B, 7euz:A, 7euz:B, 7f6x:A, 7f6x:B
21 3h1m:A 392 55 0.0502 0.0408 0.2909 2.3 3h1w:A, 3h1y:A, 5zvr:A, 5zvu:A, 5zvx:A
22 3h50:A 114 60 0.0533 0.1491 0.2833 2.4
23 2q9u:A 409 45 0.0439 0.0342 0.3111 3.1 2q9u:B
24 8hjx:A 118 77 0.0502 0.1356 0.2078 3.5 8hjx:B, 8hjy:A, 8hjy:B, 8hjz:A, 8hjz:B, 6l2d:A, 6l2d:B, 6l2e:A, 6l2e:B, 6l2f:A, 6l2f:B, 1vj2:A, 1vj2:B, 5wse:A, 5wse:B, 5wse:C, 5wse:D, 5wsf:A, 5wsf:B, 5wsf:C, 5wsf:D, 8zyg:A, 8zyg:B, 8zyh:A, 8zyh:B
25 6v7g:A 357 99 0.1034 0.0924 0.3333 3.8 1dgr:X, 1dgr:V, 1dgr:N, 1dgw:X, 6v7j:A, 6v7j:B, 6v7j:C, 6v7l:A, 6v7l:B, 6v7l:C
26 7cpl:A 358 74 0.0564 0.0503 0.2432 3.8 7cpk:A, 6lps:A, 2uwf:A, 8xy0:A, 8y1m:A, 8y1m:B
27 6uts:A 229 100 0.0909 0.1266 0.2900 4.5
28 5kow:A 474 48 0.0564 0.0380 0.3750 5.4 6c7s:A, 5kox:A
29 4fxo:B 227 109 0.0909 0.1278 0.2661 5.9 4fxo:A, 4fxo:C, 4fxo:D
30 2wjs:A 519 74 0.0627 0.0385 0.2703 6.3
31 4ayg:A 1028 83 0.0690 0.0214 0.2651 6.5 4ayg:B, 3hz3:A, 3klk:A, 3kll:A
32 6bgf:A 188 59 0.0502 0.0851 0.2712 6.7 2atf:A, 2b5h:A, 6bgm:A, 6bpr:A, 6bps:A, 6bpt:A, 6bpu:A, 6bpv:A, 6bpw:A, 6bpx:A, 6cdh:A, 6cdn:A, 6e87:A, 5efu:A, 3eln:A, 5ezw:A, 2gh2:A, 5i0r:A, 5i0s:A, 5i0t:A, 5i0u:A, 2ic1:A, 4ieo:A, 4iep:A, 4ieq:A, 4ier:A, 4ies:A, 4iet:A, 4ieu:A, 4iev:A, 4iew:A, 4iex:A, 4iey:A, 4iez:A, 4jtn:A, 4jto:A, 4kwj:A, 4kwk:A, 4kwl:A, 6n42:A, 6n43:A, 4pix:A, 4piy:A, 4piz:A, 4pjy:A, 6u1m:A, 6u4l:A, 6u4s:A, 6u4v:A, 4ubg:A, 4ubh:A, 8vl9:D, 8vlb:D, 4xet:A, 4xez:A, 4xf0:A, 4xf1:A, 4xf3:A, 4xf4:A, 4xf9:A, 4xfa:A, 4xfb:A, 4xfc:A, 4xff:A, 4xfg:A, 4xfh:A, 4xfi:A, 4ysf:A, 4yyo:A, 4z82:A
33 6l9i:A 338 50 0.0502 0.0473 0.3200 7.9 6l9i:B, 6l9i:C, 6l9i:D, 6l9i:E, 6l9i:F
34 6sle:B 261 65 0.0721 0.0881 0.3538 8.1
35 7wh0:A 529 103 0.0846 0.0510 0.2621 8.2 7wh0:B
36 3fe5:A 283 63 0.0564 0.0636 0.2857 8.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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