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BioLiP
>protein
LCSLDNGDCDQFCVVCSCARGYTLAKACIPTGPYPCGKQTLE

The query sequence (length=42) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2vwn:L 44 44 1.0000 0.9545 0.9545 6.24e-24 2vwo:L
2 1p0s:L 99 51 1.0000 0.4242 0.8235 7.52e-22 2y80:B
3 1xkb:A 91 51 1.0000 0.4615 0.8235 8.90e-21 3k9x:A
4 8eph:A 91 50 0.5476 0.2527 0.4600 1.25e-07 1edm:B, 1edm:C, 8eph:C
5 4bxw:B 287 43 0.4286 0.0627 0.4186 1.21e-04 4bxw:A
6 6r2w:L 143 48 0.4524 0.1329 0.3958 8.78e-04 2a2q:L, 2aei:L, 2aer:L, 2b8o:L, 2c4f:L, 8cn9:D, 8cn9:I, 8cn9:S, 1dan:L, 1dva:L, 1dva:M, 2ec9:L, 3ela:L, 1fak:L, 1ff7:A, 1ffm:A, 2fir:L, 4ibl:L, 1j9c:L, 5l0s:B, 5par:A, 2puq:L, 1qfk:L, 3th2:L, 3th3:L, 3th4:L, 1w0y:L, 1w2k:L, 1wqv:L, 1wss:L, 1wtg:L, 1wun:L, 1wv7:L, 4ylq:L, 1z6j:L, 4z6a:L, 4zma:L, 2zp0:L, 2zwl:L, 2zzu:L
7 6l6r:A 610 38 0.2857 0.0197 0.3158 0.51 6l6r:B, 7nam:A, 3sob:B, 3soq:A, 3sov:A
8 8dvm:A 612 41 0.3095 0.0212 0.3171 0.57 4a0p:A, 8dvl:A, 8dvn:A
9 3h5c:B 312 43 0.4048 0.0545 0.3953 1.5
10 3hee:A 148 28 0.1905 0.0541 0.2857 2.2 3hee:B, 3ph3:A, 3ph3:B, 3ph4:A, 3ph4:B
11 3h0g:C 263 12 0.1905 0.0304 0.6667 2.4 3h0g:O
12 2xva:A 199 21 0.2143 0.0452 0.4286 4.8 2xva:B, 2xva:C, 2xva:D, 2xvm:A, 2xvm:B
13 8em4:A 3818 22 0.1905 0.0021 0.3636 5.5 8em4:B
14 8em7:A 4378 22 0.1905 0.0018 0.3636 7.0 8em7:B, 8jut:A, 8jut:B, 8juu:B, 8juu:A, 8jx8:B, 8jx8:A, 8jx9:B, 8jxa:A, 8jxb:A, 8jxd:A, 8jxe:A, 8jxe:B, 8jxf:B, 8jxg:A, 8jxh:A, 8jxi:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218