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BioLiP
>protein
LCGRVFKSGETTYSCRDCAIDPTCVLCMDCFQDSVHKNHRYKMHTSTGGGFCDCGDTEAWKTGPFCVNHE

The query sequence (length=70) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3ny1:A 73 70 1.0000 0.9589 1.0000 5.63e-49 3ny1:B, 5tdc:A, 5tdc:C
2 3ny2:D 73 70 0.7714 0.7397 0.7714 2.73e-29 3ny2:A, 3ny2:B, 3ny2:C, 3ny2:E, 3ny2:F, 3ny2:G, 3ny2:H, 3ny3:A, 5tda:A, 5tdb:A, 5tdd:A, 5um3:A
3 7wul:A 70 70 0.5000 0.5000 0.5000 4.86e-19 7wuk:A, 7wum:A, 7wun:A
4 7mex:A 1737 71 0.4714 0.0190 0.4648 1.70e-17 6kgi:B, 7mey:A, 3nih:A, 3nii:A, 3nij:A, 3nik:B, 3nik:D, 3nik:A, 3nik:F, 3nil:D, 3nil:A, 3nil:B, 3nil:F, 3nim:B, 3nim:F, 3nim:A, 3nim:D, 3nin:A, 3nin:B, 3nis:A, 3nis:B, 3nis:D, 3nis:F, 3nit:A
5 7y70:A 77 65 0.4429 0.4026 0.4769 4.53e-16 6lhn:A, 7xwd:A, 7xwe:A, 7xwe:B, 7xwf:A, 7xwg:A, 7xwg:B, 7y6w:A, 7y6x:A, 7y6x:B, 7y6x:D, 7y6x:E, 7y6x:F, 7y6x:G, 7y6x:H, 7y6x:C, 7y6y:A, 7y6y:B, 7y6y:C, 7y6y:D, 7y6z:A
6 8bja:B 1638 53 0.2000 0.0085 0.2642 0.006
7 8ewi:A 1775 53 0.2000 0.0079 0.2642 0.006 8ewi:B, 8ewi:C, 8ewi:D
8 8bja:A 1563 53 0.2000 0.0090 0.2642 0.007
9 8p82:A 1596 53 0.2000 0.0088 0.2642 0.007 8p82:B
10 8d4x:B 1669 53 0.2000 0.0084 0.2642 0.007 8c06:A, 8c06:D
11 8e0q:A 1689 53 0.2000 0.0083 0.2642 0.007 8d4x:A, 8e0q:B
12 6o9w:A 227 36 0.1429 0.0441 0.2778 0.96
13 8exs:A 556 36 0.1429 0.0180 0.2778 1.0 8c0p:A, 8c0p:B, 8c0s:A, 8c0s:B, 8cf3:C, 8cf3:E, 8exp:A, 8exp:B, 8exq:B, 8exq:A, 8exr:B, 8exr:A, 8exs:B, 8ext:A, 8ext:B, 6o9w:B, 3q7z:A, 3q7z:B, 3q81:A, 3q81:B, 3q82:A, 3q82:B, 1xa1:A, 1xa1:B, 1xa1:C, 1xa1:D, 1xa7:A, 1xa7:B, 1xkz:A, 1xkz:B, 1xkz:C, 1xkz:D
14 8e9b:B 387 23 0.1429 0.0258 0.4348 2.6 8uxw:B, 8uxx:B, 6w17:B, 6w18:B
15 1wig:A 73 46 0.2000 0.1918 0.3043 2.8
16 6kqs:A 620 38 0.1714 0.0194 0.3158 2.8 6kqt:A
17 7mju:A 184 20 0.1429 0.0543 0.5000 3.2 5dag:A, 5dah:B, 5dah:A
18 6xig:B 383 24 0.1571 0.0287 0.4583 3.6 6xi9:A, 6xi9:B, 6xig:A
19 3pfq:A 523 18 0.1286 0.0172 0.5000 4.0 1a25:A, 1a25:B, 2i0e:A, 2i0e:B
20 8bob:A 390 42 0.2000 0.0359 0.3333 4.2 8bob:B, 1d2f:A, 1d2f:B
21 2bwj:B 195 27 0.1571 0.0564 0.4074 4.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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