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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KVIPNFEYARRLNGKKVKIFLRNGEVLDAEVTGVSNYEIMVKVGDRNLLVFKHAIDTIEY

The query sequence (length=60) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5dy9:E 60 60 1.0000 1.0000 1.0000 1.23e-38 5dy9:A, 5dy9:F, 5dy9:D, 5dy9:G, 5dy9:L, 4x9d:A, 4x9d:F, 4x9d:B, 4x9d:C, 4x9d:D, 4x9d:E
2 4y91:F 73 48 0.2667 0.2192 0.3333 8.38e-05 4y91:G, 4y91:H, 4y91:I, 4y91:J, 4y91:K, 4y91:L, 4y91:A, 4y91:B, 4y91:C, 4y91:D, 4y91:E
3 3hsb:B 69 41 0.2500 0.2174 0.3659 2.56e-04 3ahu:A, 3ahu:B, 3ahu:C, 3hsb:A, 3hsb:C, 3hsb:D, 3hsb:F
4 4nl3:F 75 54 0.3167 0.2533 0.3519 3.60e-04 4nl3:D, 4nl3:A, 4nl3:B, 4nl3:J, 4nl3:G, 4nl3:H, 4nl3:C, 4nl3:E, 4nl3:I, 4nl3:K, 4nl3:L
5 5sze:A 71 43 0.2667 0.2254 0.3721 0.001
6 1kq2:H 62 57 0.2500 0.2419 0.2632 0.47 1kq2:A, 1kq2:B, 1kq2:I, 1kq2:K, 1kq2:M, 3qsu:A, 3qsu:B, 3qsu:H, 3qsu:C, 3qsu:E, 3qsu:F, 3qsu:D, 3qsu:S
7 1ahp:A 796 37 0.2000 0.0151 0.3243 0.68 1ahp:B, 2asv:A, 2asv:B, 2av6:A, 2av6:B, 2aw3:A, 2aw3:B, 2azd:A, 2azd:B, 1e4o:A, 1e4o:B, 2ecp:A, 2ecp:B, 1l5v:A, 1l5v:B, 1l5w:A, 1l5w:B, 1l6i:A, 1l6i:B, 1qm5:A, 1qm5:B, 8rvk:A
8 6aso:D 59 24 0.1500 0.1525 0.3750 0.81
9 7tm7:A 802 37 0.1833 0.0137 0.2973 0.95 7tm7:B
10 5gan:4 74 24 0.1500 0.1216 0.3750 1.0 4m7a:N, 4m7a:G, 4m7d:N, 5nrl:j, 5vsu:D
11 7o4k:G 171 30 0.2000 0.0702 0.4000 1.1
12 3pcs:B 355 50 0.2500 0.0423 0.3000 2.6 4fma:A, 4fma:B, 4fma:C, 4fma:D, 4fma:E, 4fma:F, 4fma:H, 4fma:I, 4fma:J, 4fma:L, 4fmd:E, 3pcs:A, 3pcs:C, 3pcs:D
13 4bub:B 483 32 0.2333 0.0290 0.4375 2.7 4bub:A
14 8slv:A 562 23 0.1667 0.0178 0.4348 3.0
15 6d0g:A 299 61 0.3500 0.0702 0.3443 3.8
16 6ftx:W 878 56 0.2167 0.0148 0.2321 4.9 6g0l:W, 5j70:A, 5j70:B, 3mwy:W, 3ted:A
17 7tn2:W 895 56 0.2167 0.0145 0.2321 5.2 9gd2:W, 9gd3:W
18 9gd1:W 849 56 0.2167 0.0153 0.2321 5.2
19 6g0l:M 855 56 0.2167 0.0152 0.2321 5.4 7nkx:W, 5o9g:W
20 2okl:A 185 38 0.2500 0.0811 0.3947 5.6 2okl:B
21 2mbx:A 109 42 0.2167 0.1193 0.3095 6.0
22 2j1r:A 141 37 0.2167 0.0922 0.3514 8.3 2j1r:B, 2j1s:A, 2j1s:B, 2j1t:A, 2j1t:B, 2j1u:A, 2j1u:B, 2j1v:A, 2j1v:B
23 5yyc:A 368 18 0.1667 0.0272 0.5556 8.4 5yyc:C
24 3irm:A 520 33 0.2000 0.0231 0.3636 8.8 3cl9:A, 3clb:A, 3clb:B, 3clb:C, 3clb:D, 2h2q:A, 2h2q:B, 3hbb:A, 3hbb:B, 3hbb:C, 3hbb:D, 3inv:A, 3inv:B, 3irm:B, 3irm:C, 3irm:D, 3irn:A, 3irn:B, 3irn:C, 3irn:D, 3iro:A, 3iro:B, 3iro:C, 3iro:D, 3kjs:A, 3kjs:B, 3kjs:C, 3kjs:D, 5t7o:A, 5t7o:B, 5t7o:C, 5t7o:D
25 6zop:A 84 30 0.1500 0.1071 0.3000 9.1

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218