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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KVAKLDTSQWPLLLKNFDKLNVRTTHYTPLACGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEKTGHSG
TLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLTGALFQRPPLIAAVKRQLRVRTIYES
KMIEYDPERRLGIFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTMHDVLDAQWLYDNHKDESYL
RRVVYPLEKLLTSHKRLVMKDSAVNAICYGAKIMLPGVLRYEDGIEVNQEIVVITTKGEAICMAIALMTTAVISTCDHGI
VAKIKRVIMERDTYPRKWGLGPKASQKKLMIKQ

The query sequence (length=353) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8oue:C 394 353 0.9858 0.8832 0.9858 0.0 7bgb:G, 7bgb:C, 8oue:G, 8ouf:C, 8ouf:G, 7trc:G, 7trc:C, 7v9a:C, 7v9a:G
2 2rfk:A 334 306 0.3683 0.3892 0.4248 1.37e-84 3hax:A, 3hay:A, 3hjw:A, 3hjy:A, 2hvy:A, 3lwo:A, 3lwp:A, 3lwq:A, 3lwr:A, 3lwv:A, 3mqk:A
3 1ze1:A 308 302 0.2238 0.2565 0.2616 1.06e-20 2ab4:A, 1r3e:A, 1ze1:B, 1ze1:C, 1ze2:A
4 1ze1:D 284 287 0.2210 0.2746 0.2718 1.69e-20
5 1k8w:A 304 192 0.1615 0.1875 0.2969 1.41e-16 1zl3:A
6 1ze2:B 218 275 0.1926 0.3119 0.2473 2.66e-13
7 4ohb:A 159 69 0.0510 0.1132 0.2609 4.8 4jem:A, 4jem:B
8 4ffl:A 353 74 0.0623 0.0623 0.2973 7.0 4ffm:A, 4ffn:A, 4ffo:A, 4ffp:A, 4ffr:A
9 1f6d:A 376 41 0.0453 0.0426 0.3902 7.7 1f6d:B, 1f6d:C, 1f6d:D, 1vgv:B, 1vgv:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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