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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KTIWQNYIDALFETFPQLEISEVWAKWDGGNVGDAKLTANIRTGEHFLKAREAHIVDPNSDIYNTILYPKTGADLPCFGM
DLMKFSDKKVIIVFDFQHPREKYLFSVDGLPEDDGKYRFFEMGNHFSKNIFVRYCKPDEVDQYLDTFKLYLTKYKEMIDN
NKPVGEDTTVYSDFDTYMTELDPVRGYMKNKFGEGRSEAFVNDFLFSYK

The query sequence (length=209) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2vgr:C 213 211 1.0000 0.9812 0.9905 1.03e-155 2vck:A, 2vck:B, 2vck:C, 2vck:D, 2vgr:A, 2vgr:B, 2vgr:D, 2x9i:A, 2x9i:B, 2x9i:C, 2x9i:D, 2x9j:A, 2x9j:B
2 2x9o:A 233 163 0.2105 0.1888 0.2699 8.08e-10
3 6qx6:A 264 182 0.2153 0.1705 0.2473 2.34e-06 6qx6:B
4 2d1e:A 243 161 0.1627 0.1399 0.2112 0.39 3ajg:A, 3ajg:B, 3ajh:A, 3ajh:B, 5b4h:A, 5b4i:A, 5b4j:A, 4eoc:A, 4eod:A, 4eoe:A, 3f0l:A, 3f0m:A, 3i8u:X, 3i94:A, 3i95:A, 3nb8:A, 3nb9:A, 4qcd:A, 7yk9:A, 7ykb:A
5 2a98:A 259 64 0.0909 0.0734 0.2969 0.88
6 9eut:A 728 60 0.0909 0.0261 0.3167 0.95 3c2w:A, 3c2w:B, 3c2w:C, 3c2w:D, 3c2w:E, 3c2w:F, 3c2w:G, 3c2w:H, 9eut:B, 9euy:A, 9euy:B, 3g6o:A, 3g6o:B, 3ibr:A, 3ibr:B, 3nhq:A, 3nhq:B, 3nhq:C, 3nhq:D, 3nhq:E, 3nhq:F, 3nhq:G, 3nhq:H, 3nop:C, 3not:C, 3nou:C
7 8gym:b9 188 111 0.1292 0.1436 0.2432 1.4 8b6f:AQ, 8bqs:AQ, 8gym:B9, 7tgh:B9
8 6g7a:A 262 34 0.0718 0.0573 0.4412 2.7 8co3:A, 8co3:B, 8co3:C, 8co3:D, 6g5l:A, 6g5l:B, 6g5l:C, 6g5l:D, 6g7a:B, 6g7a:C, 6g7a:D, 4ht2:A, 4ht2:B, 4ht2:C, 4ht2:D, 1jcz:A, 1jcz:B, 1jd0:A, 1jd0:B, 4kp5:A, 4kp5:B, 4kp5:C, 4kp5:D, 4kp8:A, 4kp8:B, 4kp8:C, 4kp8:D, 5ll5:A, 5ll5:B, 5ll5:C, 5ll5:D, 5ll9:A, 5ll9:B, 5ll9:C, 5ll9:D, 5llo:A, 5llo:B, 5llo:C, 5llo:D, 5llp:A, 5llp:B, 5llp:C, 5llp:D, 5msa:A, 5msa:B, 5msa:C, 5msa:D, 5msb:A, 5msb:B, 5msb:C, 5msb:D, 7pp9:A, 7pp9:B, 7pp9:C, 7pp9:D, 7puu:A, 7puu:B, 7puu:C, 7puu:D, 7puv:A, 7puv:B, 7puv:C, 7puv:D, 7puw:A, 7puw:B, 7puw:C, 7puw:D, 4q0l:A, 4q0l:B, 4q0l:C, 4q0l:D, 4qj0:A, 4qj0:B, 4qj0:C, 4qj0:D, 4qjo:A, 4qjo:B, 4qjo:C, 4qjo:D, 4qjw:A, 4qjw:B, 4qjw:C, 4qjw:D, 6qn0:A, 6qn0:B, 6qn0:C, 6qn0:D, 6qng:A, 6qng:B, 6qng:C, 6qng:D, 6qnl:A, 6qnl:B, 6qnl:C, 6qnl:D, 6r6y:A, 6r6y:B, 6r6y:C, 6r6y:D, 6r71:A, 6r71:B, 6rps:A, 6rps:B, 6t5p:A, 6t5p:B, 6t5p:C, 6t5p:D, 6t5q:A, 6t5q:B, 6t5q:C, 6t5q:D, 4ww8:A, 4ww8:B, 4ww8:C, 4ww8:D
9 4z8a:A 75 31 0.0718 0.2000 0.4839 2.8
10 8ppk:G 240 35 0.0622 0.0542 0.3714 3.3 7a01:b3, 7a09:r, 5a2q:G, 5aj0:BG, 9bdl:AS06, 9bdn:AS06, 9bdp:AS06, 8bhf:H3, 9bkd:S, 9bln:S, 8btk:Af, 7cpu:SG, 7cpv:SG, 4d5l:G, 4d61:G, 6d90:HH, 6d9j:HH, 9f1b:Af, 9f1c:Af, 9f1d:Af, 6fec:q, 5flx:G, 6g18:G, 6g4s:G, 6g4w:G, 6g51:G, 6g53:G, 6g5h:G, 6g5i:G, 8g5y:SG, 8g5z:SG, 8g60:SG, 8g61:SG, 8g6j:SG, 8glp:SG, 6gz3:BG, 6gz4:BG, 6gz5:BG, 6hcf:H1, 6hcj:H2, 6hcm:H1, 6hcq:H2, 8ifd:3H, 8ife:3H, 6ip5:3H, 6ip6:3H, 6ip8:3H, 3j7p:SG, 3j7r:SG, 3jag:GG, 3jah:GG, 3jai:GG, 3jaj:SG, 3jan:SG, 8jdj:3, 8jdk:3, 8jdl:3, 8jdm:3, 7jqb:H, 7jqc:H, 5k0y:q, 8k2c:SG, 7k5i:G, 4kzx:G, 4kzy:G, 4kzz:G, 5lks:SG, 7ls1:K3, 7ls2:K3, 5lzs:GG, 5lzt:GG, 5lzu:GG, 5lzv:GG, 5lzw:GG, 5lzx:GG, 5lzy:GG, 5lzz:GG, 7mdz:GG, 7mq8:L6, 7mq9:L6, 7mqa:L6, 6mtb:GG, 6mtc:GG, 6mtd:GG, 6mte:GG, 7nwg:H2, 7nwh:GG, 7nwi:GG, 7o7y:Af, 7o7z:Af, 7o80:Af, 7o81:Af, 5oa3:G, 6ole:SG, 6olf:SG, 6olg:BG, 6oli:SG, 6olz:BG, 6om0:SG, 6om7:SG, 7oya:G2, 7oyb:G2, 7oyc:G2, 7oyd:GG, 8oz0:S, 8p03:I, 8p09:I, 8p2k:Af, 6p4g:H, 6p4h:H, 6p5i:H, 6p5j:H, 6p5k:H, 6p5n:H, 8pj1:S, 8pj2:S, 8pj3:S, 8pj4:S, 8pj5:S, 8pj6:S, 8ppl:AG, 8q7z:Af, 8q87:Af, 7qgg:SG, 8qoi:SG, 7qp6:S, 7qp7:S, 7qvp:SG, 7qvp:RG, 6qzp:SG, 7r4x:G, 6r5q:z, 6r6g:z, 6r6p:z, 6r7q:z, 8scb:GG, 6sgc:H1, 7syg:H, 7syh:H, 7syi:H, 7syj:H, 7syk:H, 7syl:H, 7sym:H, 7syn:H, 7syo:H, 7syp:H, 7syq:H, 7syr:H, 7sys:H, 7syt:H, 7syu:H, 7syv:H, 7syw:H, 7syx:H, 5t2c:AK, 8t4s:G, 7toq:AS06, 7tor:AS06, 7tql:G, 7ucj:GG, 7uck:GG, 4ug0:SG, 4ujc:CG, 4ujd:CG, 4uje:BG, 4v6x:AG, 5vyc:G1, 5vyc:G2, 5vyc:G3, 5vyc:G4, 5vyc:G5, 5vyc:G6, 6w2s:H, 6w2t:H, 7wts:G, 7wtt:G, 7wtu:G, 7wtv:G, 7wtw:G, 7wtx:G, 7wtz:G, 7wu0:G, 6xa1:SG, 7xnx:SG, 7xny:SG, 8xsx:SG, 8xsy:SG, 8xsz:SG, 8xxl:SG, 8xxm:SG, 8xxn:SG, 6y0g:SG, 8y0w:SG, 8y0x:SG, 6y2l:SG, 6y57:SG, 6yal:I, 6yam:I, 6yan:I, 6ybw:S, 8yoo:SG, 8yop:SG, 6z6l:SG, 6z6m:SG, 6z6n:SG, 7zjw:SR, 7zjx:SR, 6zlw:G, 6zm7:SG, 6zme:SG, 6zmi:SG, 6zmo:SG, 6zmt:G, 6zmw:S, 6zn5:G, 6zoj:G, 6zok:G, 6zon:r, 6zp4:r, 6zuo:G, 6zv6:G, 6zvh:G, 6zvj:r, 6zvk:b3, 6zxd:G, 6zxe:G, 6zxf:G, 6zxg:G, 6zxh:G
11 4co9:A 207 25 0.0526 0.0531 0.4400 3.5 4co9:B, 4co9:C, 4co9:D, 4cz1:A, 4cz1:B, 4cz1:C, 4cz1:D
12 4z8w:A 125 48 0.0670 0.1120 0.2917 7.6
13 7chi:A 220 34 0.0718 0.0682 0.4412 8.8
14 2bhz:A 589 32 0.0574 0.0204 0.3750 9.9 2bhy:A, 2bxy:A, 2bxz:A, 2by0:A, 2by1:A, 2by2:A, 2by3:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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