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BioLiP
>protein
KSPLTYAEALANTIMNTYTVEELPPANRWHYHQGVFLCGVLRLWEATGEKRYFEYAKAYADLLIDDNGNLLFRRDELDAI
QAGLILFPLYEQTKDERYVKAAKRLRSLYGTLNRTSEGGFWHKDGYPYQMWLNGLYMGGPFALKYANLKQETELFDQVVL
QESLMRKHTKDAKTGLFYHAWDEAKKMPWANEETGCSPEFWARSIGWYVMSLADMIEELPKKHPNRHVWKNTLQDMIKSI
CRYQDKETGLWYQIVDKGDRSDNWLESSGSCLYMYAIAKGINKGYLDRAYETTLLKAYQGLIQHKTETSEDGAFLVKDIC
VGTSAGFYDYYVSRERSTNDLHGAGAFILAMTELEPLFRSAGK

The query sequence (length=363) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2d8l:A 363 363 0.9972 0.9972 0.9972 0.0 2gh4:A
2 6ex6:A 634 94 0.0716 0.0410 0.2766 0.025 6ex6:B
3 5agd:B 344 81 0.0689 0.0727 0.3086 0.097 5agd:A, 4boj:A, 4boj:B, 4boj:C, 4d4b:A, 4d4b:B, 4d4c:A, 4d4c:B, 4d4d:A, 4d4d:B, 5m77:A, 5m77:B, 5n0f:A, 5n0f:B, 7nl5:A, 6zbm:A, 6zbw:A, 6zbw:B, 6zbx:A, 6zbx:B
4 5agd:B 344 48 0.0441 0.0465 0.3333 3.2 5agd:A, 4boj:A, 4boj:B, 4boj:C, 4d4b:A, 4d4b:B, 4d4c:A, 4d4c:B, 4d4d:A, 4d4d:B, 5m77:A, 5m77:B, 5n0f:A, 5n0f:B, 7nl5:A, 6zbm:A, 6zbw:A, 6zbw:B, 6zbx:A, 6zbx:B
5 5ixm:A 543 112 0.0771 0.0516 0.2500 0.38 5ixm:C, 5ixm:E, 5ixm:G
6 8xud:D 651 91 0.0744 0.0415 0.2967 1.7 6iqq:C, 6iqq:D, 5wql:D, 5wql:C, 8xud:C
7 2ox6:A 162 54 0.0523 0.1173 0.3519 2.3
8 3sxj:A 245 92 0.0634 0.0939 0.2500 3.8 3sxj:B, 3t0i:A, 3t0i:B
9 8t6l:A 1237 74 0.0634 0.0186 0.3108 4.9 7k18:A, 6lqa:B, 6uz0:A
10 7xsu:A 1085 74 0.0634 0.0212 0.3108 5.3
11 2o5c:A 634 36 0.0331 0.0189 0.3333 7.8 1i7d:A, 2o19:A, 2o19:B, 2o54:A, 2o54:B, 2o59:A, 2o59:B, 2o5c:B, 2o5e:A, 2o5e:B
12 8sam:A 859 123 0.0799 0.0338 0.2358 9.0 8sam:B, 8sao:B, 8sao:D
13 2rhs:C 271 99 0.0551 0.0738 0.2020 9.0 2rhq:A, 2rhs:A
14 6uz3:A 1126 74 0.0606 0.0195 0.2973 9.6 7fbs:A
15 5a7v:A 368 55 0.0496 0.0489 0.3273 9.7 5a7v:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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