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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KRRQVYKPVLDNPFTNEAHMWPRVHDQPLIWQLLQSSIINKLIHIQSKENYPWELYTDFNEIVQYLSGAHGNSDPVCLFV
CNKDPDVPLVLLQQIPLLCYMAPMTVKLVQLPKSAMDTFKSVSKYGMLLLRCDDRVDKKFVSQIQKNVDLLQFPWLNAIK
YRPTSVKLLKTTVPI

The query sequence (length=175) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6agb:C 175 175 1.0000 1.0000 1.0000 2.95e-129 6ah3:C
2 3t3z:B 464 155 0.2000 0.0754 0.2258 0.22 3e4e:A, 3e4e:B, 3e6i:A, 3e6i:B, 3gph:A, 3gph:B, 3koh:A, 3koh:B, 3lc4:A, 3lc4:B, 3t3z:D, 3t3z:A, 3t3z:C
3 1q0d:A 117 28 0.0800 0.1197 0.5000 1.1 1q0d:B, 1q0d:C, 1q0d:D, 1q0d:E, 1q0d:F, 1q0d:G, 1q0d:H, 1q0d:I, 1q0d:J, 1q0d:K, 1q0d:L, 1q0f:A, 1q0f:B, 1q0f:C, 1q0f:D, 1q0f:E, 1q0f:F, 1q0f:G, 1q0f:H, 1q0f:I, 1q0f:J, 1q0f:K, 1q0f:L, 1q0g:A, 1q0g:B, 1q0g:C, 1q0g:D, 1q0g:E, 1q0g:F, 1q0g:G, 1q0g:H, 1q0g:I, 1q0g:J, 1q0g:K, 1q0g:L, 1q0k:A, 1q0k:B, 1q0k:C, 1q0k:D, 1q0k:E, 1q0k:F, 1q0k:G, 1q0k:I, 1q0k:H, 1q0k:J, 1q0k:K, 1q0k:L, 1q0m:A, 1q0m:B, 1q0m:C, 1q0m:D, 1q0m:E, 1q0m:F
4 4r7p:A 485 20 0.0629 0.0227 0.5500 2.6 4r7p:B, 4r7p:C
5 2y9w:A 391 47 0.0971 0.0435 0.3617 4.3 2y9w:B, 2y9x:A, 2y9x:B, 2y9x:C, 2y9x:D
6 3j79:Y 101 52 0.0686 0.1188 0.2308 5.4 3jbn:AY, 3jbo:AY, 3jbp:AY, 8tpu:AY, 5umd:Y
7 7sba:I 899 78 0.1029 0.0200 0.2308 6.8 7sba:K, 7sbb:J, 7sbb:K
8 7w7g:B 1711 28 0.0686 0.0070 0.4286 8.7
9 1doa:B 200 70 0.1086 0.0950 0.2714 8.9 4f38:B, 5fr1:B, 5fr2:B, 1hh4:D, 1hh4:E

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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