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BioLiP
>protein
KRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKLAR

The query sequence (length=60) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8ik5:C 67 60 1.0000 0.8955 1.0000 6.24e-38 8ike:C, 8ilw:C
2 5hod:A 61 58 0.5667 0.5574 0.5862 3.36e-19 5hod:D
3 2lkx:A 68 57 0.3833 0.3382 0.4035 1.05e-07
4 8osb:E 62 59 0.4167 0.4032 0.4237 1.59e-07
5 1fjl:A 65 57 0.3667 0.3385 0.3860 1.65e-07 1fjl:B, 1fjl:C
6 6es3:K 72 55 0.3667 0.3056 0.4000 2.60e-07 6es2:K, 6es2:L, 6es3:M, 5lty:K, 5lty:M, 5lux:K, 5lux:L, 7q3o:K, 7q3o:C, 7q3o:E, 7q3o:G, 7q4n:K, 7q4n:C
7 3a01:F 61 57 0.3833 0.3770 0.4035 2.61e-07 3a01:B, 3lnq:A
8 4rdu:D 62 60 0.3667 0.3548 0.3667 3.10e-07 4rdu:A, 4xrs:I, 4xrs:G
9 3cmy:A 60 57 0.3667 0.3667 0.3860 2.95e-06
10 6e8c:A 135 54 0.3833 0.1704 0.4259 4.18e-06 6a8r:A, 6a8r:B, 6dfy:C, 6dfy:D, 7dw5:A, 7dw5:B, 6u81:A, 6u82:A, 6u82:D, 5z2t:C, 5z2t:D, 5z6z:A, 5zfw:A, 5zfy:A, 5zfz:A
11 6e8c:A 135 49 0.3167 0.1407 0.3878 1.07e-05 6a8r:A, 6a8r:B, 6dfy:C, 6dfy:D, 7dw5:A, 7dw5:B, 6u81:A, 6u82:A, 6u82:D, 5z2t:C, 5z2t:D, 5z6z:A, 5zfw:A, 5zfy:A, 5zfz:A
12 6m3d:C 108 56 0.3167 0.1759 0.3393 8.19e-06 1du0:A, 1du0:B, 1hdd:C, 1hdd:D, 2hdd:A, 2hdd:B, 3hdd:A, 3hdd:B, 2hos:A, 2hos:B, 2hot:A, 2hot:B
13 6m3d:C 108 51 0.2333 0.1296 0.2745 0.057 1du0:A, 1du0:B, 1hdd:C, 1hdd:D, 2hdd:A, 2hdd:B, 3hdd:A, 3hdd:B, 2hos:A, 2hos:B, 2hot:A, 2hot:B
14 4qtr:C 57 54 0.3000 0.3158 0.3333 1.13e-05 4qtr:A, 4qtr:B, 4qtr:D
15 8ejo:A 56 54 0.3333 0.3571 0.3704 2.38e-04 8ejo:B, 8ejp:A, 8ejp:B
16 2d5v:A 135 50 0.2667 0.1185 0.3200 3.23e-04 2d5v:B, 8t0f:A, 8t11:A
17 2h1k:B 60 57 0.3500 0.3500 0.3684 4.40e-04 2h1k:A
18 1ig7:A 58 58 0.3333 0.3448 0.3448 7.46e-04
19 1b72:A 68 57 0.3500 0.3088 0.3684 0.001
20 3l1p:A 147 57 0.3500 0.1429 0.3684 0.001 8bx2:A, 6ht5:E, 3l1p:B, 8sps:L, 8spu:L, 6t90:K, 7u0g:M, 7u0g:L, 7u0i:L, 7u0i:M
21 8eml:A 58 56 0.3333 0.3448 0.3571 0.001 8eml:B
22 1ahd:P 68 57 0.3167 0.2794 0.3333 0.001
23 2r5z:A 75 56 0.3167 0.2533 0.3393 0.002 9ant:A, 9ant:B, 5jlw:A, 5jlw:D, 5jlx:A, 5jlx:D, 2r5y:A, 4xic:A, 4xic:D, 4xid:A, 4xid:D
24 4uus:A 67 54 0.2833 0.2537 0.3148 0.002 4uus:E
25 2ld5:A 67 29 0.2500 0.2239 0.5172 0.002
26 1gt0:C 137 57 0.3000 0.1314 0.3158 0.003 1cqt:A, 1cqt:B, 1e3o:C, 1hf0:A, 1hf0:B, 1o4x:A, 1oct:C
27 5eea:G 63 29 0.2333 0.2222 0.4828 0.003 8byx:B, 8byx:J, 8byx:A, 8byx:K, 8byx:G, 8byx:L, 5edn:A, 5edn:B, 5edn:G, 5edn:J, 5eea:B, 5eea:A, 5eea:J, 5ef6:A, 5ef6:J, 5ef6:B, 5ef6:G, 5eg0:B, 5ego:B, 5no6:A, 5no6:B, 7psx:A, 7psx:B, 7psx:G, 7psx:J
28 1lfu:P 82 33 0.2167 0.1585 0.3939 0.003 1b72:B, 1b8i:B, 4cyc:B, 1puf:B, 2r5y:B, 2r5z:B, 4uus:B, 4uus:F, 5zjq:B, 5zjr:B, 5zjs:B, 5zjt:B
29 1puf:A 77 60 0.3167 0.2468 0.3167 0.004 2lp0:A
30 1jgg:A 57 56 0.3333 0.3509 0.3571 0.004 1jgg:B
31 3d1n:I 150 54 0.3167 0.1267 0.3519 0.005 3d1n:K, 3d1n:J, 3d1n:L, 3d1n:M, 3d1n:N, 3d1n:O, 3d1n:P
32 4cyc:A 66 54 0.2833 0.2576 0.3148 0.005 1b8i:A
33 2me6:A 71 58 0.3167 0.2676 0.3276 0.006
34 9b8u:B 66 50 0.3000 0.2727 0.3600 0.011 9b8u:A, 9b8u:C, 9b8u:D
35 8pna:A 67 57 0.3000 0.2687 0.3158 0.013 8pm5:A, 8pm5:D, 8pm5:G, 8pm5:M, 8pm5:J, 8pm7:A, 8pm7:C, 8pm7:E, 8pm7:G, 8pmc:A, 8pmc:C, 8pmc:E, 8pmc:G, 8pmf:A, 8pmn:A, 8pmv:A, 8pmv:D, 8pmv:G, 8pmv:J, 8pn4:A, 8pn4:D, 8pn4:G, 8pn4:M, 8pn4:J, 8pnc:A, 8pnc:K, 8pnc:E, 8pnc:H
36 8g8e:X 140 57 0.3333 0.1429 0.3509 0.023 8g87:X, 8g88:X, 8g8b:X, 8g8g:X, 8sps:M, 7u0g:K
37 8bx1:A 127 45 0.2833 0.1339 0.3778 0.046
38 5wc9:A 136 55 0.2833 0.1250 0.3091 0.050 1au7:A, 1au7:B, 5wc9:B, 5wc9:E, 5wc9:F
39 4egc:A 539 52 0.2667 0.0297 0.3077 0.076
40 1nk2:P 77 28 0.2167 0.1688 0.4643 0.097 1nk3:P
41 5zjr:A 64 40 0.2500 0.2344 0.3750 0.12 5zjq:A, 5zjs:A, 5zjt:A, 5zjt:E
42 3rkq:A 58 56 0.2667 0.2759 0.2857 0.27 3rkq:B
43 4xrm:B 64 46 0.2333 0.2188 0.3043 0.37 5bng:B, 5bng:A, 5eg0:A, 5ego:A, 8vts:B, 8vts:D, 8vtt:D, 4xrm:A, 4xrs:A, 4xrs:B
44 4rbo:A 55 27 0.2000 0.2182 0.4444 0.37 4rbo:D
45 7xrc:C 134 47 0.2667 0.1194 0.3404 0.42 2xsd:C
46 5flv:M 229 28 0.2000 0.0524 0.4286 1.0 5flv:A, 5flv:E, 5flv:I, 4s0h:A, 4s0h:B, 4s0h:E, 4s0h:F, 6wc2:N, 6wc2:M, 6wc2:O, 6wc5:I, 6wc5:N, 2x6u:A, 2x6v:A, 2x6v:B
47 5e37:A 313 17 0.1333 0.0256 0.4706 3.7 5e37:C
48 3a01:A 78 57 0.2833 0.2179 0.2982 3.9 3a01:E
49 1le8:A 53 29 0.1833 0.2075 0.3793 4.2 1akh:A, 1yrn:A
50 8ddx:D 992 22 0.1667 0.0101 0.4545 4.3
51 8ddr:A 968 22 0.1667 0.0103 0.4545 4.5 8ddq:A, 8ddq:B, 8ddq:C, 8ddq:D, 8ddr:B, 8ddr:C, 8ddr:D, 8dds:A, 8dds:B, 8dds:C, 8dds:D, 8ddt:A, 8ddt:B, 8ddt:C, 8ddt:D, 8ddu:A, 8ddu:B, 8ddu:C, 8ddu:D, 8ddv:A, 8ddv:B, 8ddv:C, 8ddv:D, 8ddx:A, 8ddx:B, 8ddx:C, 8ed7:A, 8ed7:B, 8ed7:C, 8ed7:D, 8ed8:A, 8ed8:B, 8ed8:C, 8ed8:D, 8ed9:A, 8ed9:B, 8ed9:C, 8ed9:D
52 8si6:A 1107 23 0.1500 0.0081 0.3913 6.7 8si2:A, 8si2:B, 8si2:D, 8si2:C, 8si3:A, 8si3:B, 8si3:C, 8si3:D, 8si4:A, 8si4:B, 8si4:C, 8si4:D, 8si5:A, 8si5:B, 8si5:D, 8si5:C, 8si6:B, 8si6:C, 8si6:D, 8si7:A, 8si7:B, 8si7:D, 8si7:C, 8si8:A, 8si8:B, 8si8:D, 8si8:C, 8sia:A, 8sia:D, 8sia:B, 8sia:C, 8w2l:A, 8w2l:B, 8w2l:C, 8w2l:D
53 1zq3:P 68 24 0.1500 0.1324 0.3750 7.3
54 5zwb:A 271 39 0.2500 0.0554 0.3846 8.1 5zw9:A, 5zwa:A, 5zwa:B
55 8ila:A 429 18 0.1833 0.0256 0.6111 8.5 8ila:C, 8ila:B, 8ila:D, 8ixq:B, 8ixq:D
56 5npu:A 547 35 0.1833 0.0201 0.3143 9.5 5npu:B, 5npu:C, 5npu:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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