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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KRNKPGKATGKGKPVGDKWLDDAGKDSGAPIPDRIADKLRDKEFKSFDDFRKAVWEEVSKDPELSKNLNPSNKSSVSKGY
SPFTPKNQQVGGRKVYELHHDKPISQGGEVYDMDNIRVTTPKRHIDIHRG

The query sequence (length=130) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1fsj:B 134 130 1.0000 0.9701 1.0000 3.62e-93 1fr2:B, 1fsj:C, 1fsj:D, 1fsj:E, 2gyk:B, 2gyk:F, 2gze:B, 2gzf:B, 2gzg:B, 2gzi:B, 2gzj:B, 2gzj:F, 1v13:A, 1v13:B, 1v14:A, 1v14:B, 1v14:C, 1v14:D, 1v15:B, 1v15:D, 1v15:C
2 3u43:B 132 130 0.8154 0.8030 0.8154 3.11e-74
3 1v15:A 106 128 0.8000 0.9811 0.8125 8.17e-66
4 3fbd:A 132 130 0.6923 0.6818 0.6923 4.72e-61 7cei:B, 3fbd:D, 3gjn:B, 3gjn:C, 3gkl:A, 2ivh:A, 2jaz:B, 2jaz:D, 2jb0:B, 2jbg:B, 2jbg:D, 1m08:A, 1m08:B, 1mz8:B, 1mz8:D, 1pt3:A, 1pt3:B, 3zfk:A, 3zfk:B, 1zns:A, 1znv:B, 1znv:D
5 4qko:D 133 129 0.5000 0.4887 0.5039 2.06e-43 4qko:B, 4qko:F, 4qko:H
6 7d5s:BE 865 60 0.1385 0.0208 0.3000 1.2 7ajt:UU, 6ke6:BE, 6lqp:BE, 6lqq:BE, 6lqu:BE, 7suk:LT, 5wlc:LT, 6zqa:UU, 6zqb:UU, 6zqc:UU
7 2wym:A 303 69 0.1615 0.0693 0.3043 1.8 2wym:B, 2wym:C, 2wym:D, 2wym:E, 2wym:F
8 3j5s:D 554 82 0.1846 0.0433 0.2927 3.9
9 1wzc:B 244 68 0.1692 0.0902 0.3235 4.8 1wzc:A
10 5dst:C 317 42 0.1231 0.0505 0.3810 8.6 5dst:A, 5dst:B, 5dst:D, 5dst:E, 5dst:F, 5dst:G, 5dst:H, 5dst:I, 5dst:J, 5dst:K, 5dst:L, 5dst:M, 5dst:N, 5dst:O, 4x41:A
11 8yh9:J 242 13 0.0692 0.0372 0.6923 9.2
12 6jp4:A 770 33 0.0923 0.0156 0.3636 9.5 6jp4:B, 6jp4:C, 6jph:A, 6jpn:A
13 8w1p:G 340 13 0.0692 0.0265 0.6923 10.0 8ydb:J, 8yeo:J

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218