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BioLiP
>protein
KRKLIVDSVKELDSKTIRAQLSDYSDIVTTLDLAPPTKKLMMWKETGGVEKLFSLPAQPLWNNRLLKLFTRCLT

The query sequence (length=74) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6qnx:B 74 74 1.0000 1.0000 1.0000 1.68e-49 7zjs:B, 7zjs:D
2 3veh:B 451 52 0.2568 0.0421 0.3654 1.8 2g5f:A, 2g5f:B, 3log:B, 8qc4:A, 8qc4:B, 8qn5:A, 8qn5:B, 8qn5:C, 8qn5:D, 3rv6:A, 3rv7:A, 3rv7:B, 3rv7:C, 3rv7:D, 3rv8:A, 3rv8:B, 3rv8:C, 3rv8:D, 3rv9:A, 3rv9:B, 3rv9:D, 3st6:A, 3st6:B, 3veh:A, 3veh:C, 3veh:D, 6za4:A, 6za4:C, 6za4:D, 6za5:B, 6za5:D
3 1jqn:A 874 66 0.2568 0.0217 0.2879 5.5 1fiy:A, 1qb4:A
4 7k1j:A 3584 49 0.2432 0.0050 0.3673 5.5 7k19:A
5 7k1k:A 3604 49 0.2432 0.0050 0.3673 5.6 7k1b:A
6 7k1n:A 3634 49 0.2432 0.0050 0.3673 5.7 7z88:A
7 8ez9:L 3662 76 0.3378 0.0068 0.3289 5.8 8ez9:C
8 7k0y:A 3669 49 0.2432 0.0049 0.3673 5.8
9 7otm:A 3656 49 0.2432 0.0049 0.3673 5.9 7otp:A, 7otv:A, 7otw:A, 7oty:A
10 8ezb:C 3724 49 0.2432 0.0048 0.3673 5.9 8ezb:L
11 7sud:A 3740 49 0.2432 0.0048 0.3673 6.0
12 6zhe:A 3768 76 0.3378 0.0066 0.3289 6.0
13 7su3:A 3802 49 0.2432 0.0047 0.3673 6.0
14 7sgl:A 3852 49 0.2432 0.0047 0.3673 6.0
15 7k17:B 3645 49 0.2432 0.0049 0.3673 6.0 7k17:A
16 8c3a:AR 311 50 0.1892 0.0450 0.2800 6.0 8c3a:DT, 8cq7:AR, 8cq7:DT, 8cqw:AR, 8cqw:DT, 8cre:AR, 8cre:DT, 8oeq:AR, 8oeq:DT, 7pzy:h, 7q08:h, 7q0f:h, 7q0p:h, 7q0r:h
17 6zhe:F 3731 76 0.3378 0.0067 0.3289 6.1
18 7z87:A 3689 49 0.2432 0.0049 0.3673 6.1
19 6zha:A 3707 76 0.3378 0.0067 0.3289 6.1 6zh8:A
20 5y3r:C 3636 76 0.3378 0.0069 0.3289 6.2
21 8eza:L 3720 49 0.2432 0.0048 0.3673 6.3 8eza:C, 7lt3:C, 7lt3:L
22 6za4:B 423 44 0.2027 0.0355 0.3409 7.3 3rv6:B, 3rv9:C
23 8p5s:A 1087 28 0.1486 0.0101 0.3929 7.9 8p5x:A, 8p5x:B, 8p5x:C, 8p5x:D, 8p5x:E, 8p5x:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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