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BioLiP
>protein
KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDLYSHK

The query sequence (length=55) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1dh3:A 55 55 1.0000 1.0000 1.0000 4.67e-32 1dh3:C, 5zk1:A, 5zko:A, 5zko:C
2 1t2k:D 61 45 0.3273 0.2951 0.4000 0.024
3 8k86:A 63 42 0.3455 0.3016 0.4524 0.066 8k86:B, 8k8a:A, 8k8a:B
4 5t01:A 62 35 0.2909 0.2581 0.4571 0.12 1a02:J, 1fos:F, 1fos:H, 5fv8:D, 2h7h:A, 2h7h:B, 1jnm:A, 1jnm:B, 1s9k:E, 5t01:B
5 5vpe:D 67 35 0.2545 0.2090 0.4000 0.65 5vpe:B, 5vpf:B, 5vpf:D
6 4a0l:E 709 33 0.1818 0.0141 0.3030 0.85 4a0l:H, 8ei1:A, 8ei1:B, 8ei1:C, 8ei1:D
7 1aqy:A 283 27 0.2000 0.0389 0.4074 3.5 1aqu:A, 1aqu:B, 1aqy:B, 1bo6:A, 1bo6:B
8 5dpd:A 511 42 0.2000 0.0215 0.2619 5.7 5dnk:A, 5dnk:B, 5dpd:B
9 6fsk:A 484 21 0.1636 0.0186 0.4286 6.2 6fsk:B, 6fsl:A, 6fsl:B
10 7zy4:B 306 37 0.2364 0.0425 0.3514 7.0 7zy4:A
11 2gou:A 365 33 0.2000 0.0301 0.3333 7.2 4aws:A, 4awt:A, 4awu:A, 2gq8:A, 2gq9:A, 2gqa:A
12 4a75:A 89 24 0.1818 0.1124 0.4167 8.8 4a75:C, 4a75:E, 4a75:G, 4a76:A, 4a76:G, 4a76:C, 4a76:E, 4alp:A, 4alp:D
13 8a1z:A 396 34 0.2000 0.0278 0.3235 9.2 8a21:A, 5is2:A, 5it0:A, 5it4:A, 5jjb:A, 5jlp:A, 5jlr:A, 5jma:A, 3p96:A, 5t41:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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