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BioLiP
>protein
KREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKTLIEELKALKDLYC

The query sequence (length=53) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1dh3:A 55 53 0.9434 0.9091 0.9434 8.68e-29 1dh3:C, 5zk1:A, 5zko:A, 5zko:C
2 5vpe:D 67 44 0.3019 0.2388 0.3636 0.041 5vpe:B, 5vpf:B, 5vpf:D
3 8k86:A 63 42 0.3396 0.2857 0.4286 0.086 8k86:B, 8k8a:A, 8k8a:B
4 1t2k:D 61 50 0.3396 0.2951 0.3600 0.15
5 2gu2:A 307 40 0.2830 0.0489 0.3750 0.33 2gu2:B, 2q4z:B
6 5t01:A 62 35 0.2830 0.2419 0.4286 0.50 1a02:J, 1fos:F, 1fos:H, 5fv8:D, 2h7h:A, 2h7h:B, 1jnm:A, 1jnm:B, 1s9k:E, 5t01:B
7 4mri:B 303 40 0.2642 0.0462 0.3500 0.55 2i3c:A, 2i3c:B, 4mri:A, 4mxu:A, 4mxu:B, 4nfr:A, 4nfr:B, 2o4h:A, 2o4h:B, 2o53:A, 2o53:B, 2q51:A, 2q51:B, 4tnu:A, 4tnu:B
8 4a0l:E 709 29 0.1698 0.0127 0.3103 2.0 4a0l:H, 8ei1:A, 8ei1:B, 8ei1:C, 8ei1:D
9 2d8q:A 70 40 0.2642 0.2000 0.3500 5.0 2dan:A
10 4a75:A 89 24 0.1887 0.1124 0.4167 6.2 4a75:C, 4a75:E, 4a75:G, 4a76:A, 4a76:G, 4a76:C, 4a76:E, 4alp:A, 4alp:D
11 6brd:A 474 52 0.2642 0.0295 0.2692 7.4 6brd:B, 6brd:C, 5vqb:A, 5vqb:B, 5vqb:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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