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BioLiP
>protein
KPRVVWSVELHQQFVAAVNQLGVEKAVPKKILELMNVPGLTRENVASHLQKYRIYLRRL

The query sequence (length=59) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8xas:C 63 59 1.0000 0.9365 1.0000 3.57e-38 8xas:B, 8xas:D, 8xas:A, 8xas:E, 8xas:F
2 6qec:A 65 57 0.6271 0.5692 0.6491 6.96e-24 5lxu:A
3 6j5b:C 59 55 0.5254 0.5254 0.5636 7.12e-15 6j4r:A, 6j4r:D, 6j4r:B, 6j4r:C, 6j5b:A, 6j5b:D, 6j5b:F, 6j5b:H, 6j5b:J
4 7d3t:D 62 53 0.5085 0.4839 0.5660 2.12e-13 7d3t:A, 7d3t:B, 7d3t:C
5 8i3q:A 595 40 0.2373 0.0235 0.3500 1.1
6 6xmg:A 638 16 0.1695 0.0157 0.6250 1.2 6xmf:A
7 5e1r:C 358 40 0.2542 0.0419 0.3750 2.2 5e1r:A, 5e1r:B, 5e1r:D, 5e1r:E, 5e1r:F
8 7eu1:A 1065 46 0.2203 0.0122 0.2826 3.8
9 6d3a:A 347 46 0.2881 0.0490 0.3696 4.6 7akr:AAA, 7akr:BBB, 7akr:CCC, 7akr:DDD, 7aks:AAA, 7aks:CCC, 7aks:EEE, 7aks:GGG, 7arw:A, 7arw:B, 6d36:C, 6d36:D, 6d36:A, 6d36:B, 6d3a:C, 6d3a:D, 6d3a:B, 2foz:A, 2fp0:A, 2fp0:B, 2g4k:A, 7l9f:C, 7l9f:D, 7l9f:A, 7l9f:B, 7l9h:C, 7l9h:D, 7l9h:A, 7l9h:B, 7l9i:C, 7l9i:D, 7l9i:A, 7l9i:B, 2qty:A, 2qty:B, 5zqy:A
10 6i44:A 594 29 0.1695 0.0168 0.3448 6.5 5f8t:A, 5f8x:A, 5f8z:A, 7n7x:AAA, 6o1g:A, 6o1s:E, 7qox:B, 7qox:A, 6t7p:A, 5tjx:A
11 8om2:J 162 32 0.2034 0.0741 0.3750 6.9 8d8k:J, 8d8l:J, 8om3:J, 8om4:J
12 5ahz:A 243 52 0.2203 0.0535 0.2500 7.1 5ahy:A, 1e12:A, 5g36:A, 2jaf:A, 2jag:A
13 4a5g:A 307 32 0.1525 0.0293 0.2812 9.0 4a5g:B
14 2qtl:A 448 31 0.1695 0.0223 0.3226 9.4 2qtz:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417