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BioLiP
>protein
KPLPAPLDGQRKKRGGRRYRKMKERLGLTEIRKQANRMSFGEIEEDAYQE

The query sequence (length=50) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8r0a:L 292 50 1.0000 0.1712 1.0000 6.69e-30 6ah0:L
2 5o9z:H 413 50 1.0000 0.1211 1.0000 3.25e-29 6ahd:L, 8h6e:4D, 8h6k:4D, 8h6l:4D, 2ozb:B, 2ozb:E, 8q7n:L, 8qo9:L, 8qoz:L, 8qp8:L, 8qp9:L, 8qpa:L, 8qpb:L, 8qpe:L, 8qpk:L, 6qw6:4C, 6qx9:4C, 8qxd:L, 8qzs:L, 8r08:L, 8r09:L, 8r0b:L, 8rm5:L, 3siu:B, 3siu:E, 3siv:B, 3siv:E, 3siv:H, 3siv:K, 8y6o:L
3 3jcm:I 416 53 0.5000 0.0601 0.4717 1.70e-08 5gan:F, 5gap:F, 5nrl:F, 5zwm:L, 5zwo:L
4 1r6v:A 671 30 0.2200 0.0164 0.3667 1.8
5 4k0x:A 243 26 0.1800 0.0370 0.3462 2.4 4jf4:A, 4jf4:B, 4k0w:A, 6n6u:A, 6n6v:A, 6n6x:A, 6n6y:A, 7t7d:A, 7t7e:A, 7t7f:A, 7t7g:A, 5wi3:B, 5wi3:A, 5wi7:A, 5wi7:B, 5wib:A, 5wib:B, 4x55:A, 4x55:B
6 6yw5:OO 276 20 0.2200 0.0399 0.5500 2.7 6ywe:OO, 6ywx:OO, 6ywy:OO
7 8g4c:B 248 41 0.2600 0.0524 0.3171 5.7 8g4c:C, 8g4d:B, 8g4d:C, 7tch:B, 7tch:C
8 6zj3:LW 208 32 0.2800 0.0673 0.4375 6.8
9 4ztx:A 768 58 0.3400 0.0221 0.2931 7.2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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