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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KPIKTLLITGQNNHNWQVSHVVLKQILENSGRFDVDFVISPEQGKDMSGFVLDFSPYQLVVLDYNGDSWPEETNRRFLEY
VQNGGGVVIYHAADNAFSKWPEFNRICALGGWEGRNENSGPYVYWKDGKLVKDSSAGPGGSHGRQHEYVLNGRDKVHPVV
KGLPLKWRHAKDELYDRMRGPGNIRDILYTAYSDKETNGSGREEPLVFTVDYGNARIFHTMLGHAGATTEDNIAMQCTGF
QVLLLRGAEWAATGKVTQKVPKDFPTETTCSYRKDYKEN

The query sequence (length=279) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4e5v:A 280 279 1.0000 0.9964 1.0000 0.0 4e5v:B
2 6q03:A 416 65 0.0753 0.0505 0.3231 0.25 6q0a:A, 6q0y:A, 6q11:A
3 4qhz:C 240 51 0.0753 0.0875 0.4118 0.29 4qhz:A, 4qhz:B, 4qhz:D
4 4pxy:A 244 152 0.1290 0.1475 0.2368 0.63 4pxy:B
5 7uac:H 546 25 0.0394 0.0201 0.4400 0.75 7uab:E, 7uab:H, 7uae:A, 7uaf:B, 7uaf:A, 7uaf:C, 7uaf:D, 7uai:E, 7uai:B, 7uai:C, 7uai:D
6 7uab:A 481 25 0.0394 0.0229 0.4400 0.85 7uab:D
7 3vyw:D 306 141 0.1111 0.1013 0.2199 1.7 3vyw:A, 3vyw:B, 3vyw:C
8 3ujj:H 230 85 0.0753 0.0913 0.2471 2.5 6vbo:H
9 2rjo:A 322 57 0.0645 0.0559 0.3158 5.0
10 6q45:A 476 65 0.0789 0.0462 0.3385 7.2 6q45:B, 6q45:C, 6q45:I, 6q45:J, 6q45:K
11 7qx0:B 443 30 0.0502 0.0316 0.4667 7.4 7qx0:A, 7qx0:C, 7qx0:D, 7qx3:B, 7qx3:C, 7qx3:A, 7qx3:D
12 6gi5:B 271 81 0.0717 0.0738 0.2469 8.3 6gi1:A, 6gi1:B, 6gi2:A, 6gi2:B, 6gi5:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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