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BioLiP
>protein
KNSEMKINLRLEQFKKELVLYEQKKFKEYGMKIDEITKENKKLANEIGRLRERWDSLVESA

The query sequence (length=61) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5kc1:F 61 61 1.0000 1.0000 1.0000 6.91e-38 5kc1:D, 5kc1:B, 5kc1:L, 5kc1:J
2 1q4s:A 142 37 0.2459 0.1056 0.4054 0.14 1q4s:B, 1q4t:A, 1q4t:B, 1q4u:A, 1q4u:B, 3r32:A, 3r32:B, 3r34:A, 3r34:B, 3r35:A, 3r35:B, 3r37:A, 3r37:B, 3r3a:A, 3r3a:B, 3r3b:A, 3r3b:B, 3r3c:A, 3r3c:B, 3r3d:A, 3r3d:B, 3r3f:A, 3r3f:B, 3tea:A, 3tea:B
3 6ax8:A 509 41 0.2623 0.0314 0.3902 1.2 5xet:C
4 6fah:E 393 43 0.2951 0.0458 0.4186 1.3 6fah:A
5 3fxr:A 296 20 0.1475 0.0304 0.4500 1.6 3fxu:A, 3fxu:B, 3n6u:A
6 8pz4:A 466 31 0.1475 0.0193 0.2903 1.8 7acg:A, 4afk:A, 4azl:A, 4azl:B, 4b61:A, 4b61:B, 8q2o:A, 3rbh:A, 3rbh:B, 8rqp:A, 4xnk:A, 4xnl:A
7 3rbh:D 410 31 0.1475 0.0220 0.2903 1.8 3rbh:C
8 8c29:R 219 28 0.2131 0.0594 0.4643 2.9 8c29:r
9 6fli:A 310 27 0.2131 0.0419 0.4815 3.7 6fli:B, 6fli:C, 6fli:D, 6fli:E, 6fvs:D
10 9ax8:z 509 37 0.1967 0.0236 0.3243 5.2 3jcj:f, 3jcn:b, 5me0:W, 5me1:W, 6o7k:f, 6o9k:z
11 6qv4:A 1666 44 0.1803 0.0066 0.2500 6.7 6qv3:A
12 6mve:A 680 22 0.1475 0.0132 0.4091 8.7 6cgl:A, 6cgl:B, 6cgn:A, 6mt9:A, 6mv9:A, 6mv9:B, 6mw3:D, 6mw3:C, 6myx:C, 6myx:D, 6myx:I, 6myx:J
13 7mqa:SS 350 56 0.2459 0.0429 0.2679 9.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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