Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KNIDTVREIITVASILIKFSREDIVENRANFIAFLNEIGVTHEGRKLNQNSFRKIVSELTQEDKKTLIDEFNEGFEGVYR
YLEMYTNK

The query sequence (length=88) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6k4y:I 88 88 1.0000 1.0000 1.0000 2.81e-59
2 1exw:A 279 60 0.2045 0.0645 0.3000 0.25
3 2d0s:A 79 43 0.1136 0.1266 0.2326 0.26
4 4jou:A 155 21 0.1364 0.0774 0.5714 0.84 4fvc:A, 4fvc:B, 4fvc:C, 4fvc:D, 4fvc:E, 4fvc:F, 4oz5:A
5 2yfr:A 533 41 0.1705 0.0281 0.3659 1.1 2yfs:A, 2yft:A
6 7m4v:E 200 27 0.1023 0.0450 0.3333 2.7 7m4w:E, 7m4x:E, 7m4y:E, 7m4z:E, 7ryf:E, 7ryg:E, 7ryh:E, 7uvv:E, 7uvw:E, 7uvx:E, 7uvy:E, 7uvz:E, 7uw1:E, 6v39:E, 6v3a:E, 6v3b:E, 6v3d:E, 6yhs:C, 6ysi:C
7 7pkt:S 244 27 0.1477 0.0533 0.4815 3.1
8 5kqb:A 145 51 0.1477 0.0897 0.2549 3.3 5kqc:A
9 4rel:A 446 42 0.1818 0.0359 0.3810 4.8 4rem:A, 4ren:A, 4whm:A
10 7q72:B 502 33 0.1364 0.0239 0.3636 5.4
11 3gfx:B 394 29 0.1136 0.0254 0.3448 6.7 3gfx:A, 3gfz:A, 3gfz:B, 3gg0:A, 3gg0:B, 3gg1:A, 3gg1:B, 2kb2:A
12 3l7m:D 412 40 0.1818 0.0388 0.4000 8.7 3l7k:A, 3l7k:D, 3l7k:C, 3l7l:D, 3l7m:A, 3l7m:B, 3l7m:C
13 4ds4:D 561 70 0.2045 0.0321 0.2571 9.7 4ds5:D, 4dse:A, 4dsf:A, 4ez6:A, 4f8r:D, 3px0:A, 3px4:A
14 6m64:A 203 26 0.1250 0.0542 0.4231 9.9 7co1:A, 7co1:C, 7co1:E, 6m64:C, 6m64:E, 5xod:A, 6zvq:A

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417