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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KMCMNASCGTTSTVEWKKGWPLRSGLLADLCYRCGSAYESSLFCEQFHKDQSGWRECYLCSKRLHCGCIASKVTIELMDY
GGVGCSTCACCHQLNLNTRGEN

The query sequence (length=102) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5yug:E 102 102 1.0000 1.0000 1.0000 1.11e-72 5yug:A, 5yug:B, 5yug:G, 5yuh:A
2 5z28:B 98 90 0.5784 0.6020 0.6556 1.60e-37 5z28:A
3 3v8x:A 853 51 0.1569 0.0188 0.3137 0.14
4 8qoy:A 1036 47 0.1373 0.0135 0.2979 1.1
5 8dvm:A 612 56 0.2059 0.0343 0.3750 1.6 4a0p:A, 8dvl:A, 8dvn:A
6 7yet:A 999 29 0.1176 0.0120 0.4138 1.7
7 7yes:A 1369 29 0.1176 0.0088 0.4138 1.8 8jsl:A, 8jsm:A, 8jsn:A, 7yer:A
8 7l7b:D 1148 58 0.1765 0.0157 0.3103 2.6
9 8i23:D 1154 75 0.1961 0.0173 0.2667 2.7 8i24:D
10 6lod:E 157 38 0.1275 0.0828 0.3421 3.5 6loe:E
11 8aaf:e 1527 32 0.1275 0.0085 0.4062 4.5 8agt:e, 8agu:e, 8agv:e, 8agw:e, 8agx:e, 8agz:e
12 7aoh:B 1134 81 0.1863 0.0168 0.2346 6.0 7amv:B, 7aof:B, 7aoz:B, 7ap8:B, 7ap9:B, 8c8h:B, 6rfl:B, 6ric:B, 6rid:B, 6rie:B
13 8p0j:B 1155 81 0.1863 0.0165 0.2346 6.0 8p0k:B, 8p0n:B
14 4wxx:B 1178 50 0.1471 0.0127 0.3000 6.8 3epz:A, 3epz:B, 7lmk:A, 7lmk:B, 7lmk:C, 7lmk:D, 7lmm:A, 7lmm:B, 7lmm:C, 7lmm:D, 3pta:A, 7sfc:A, 7sfd:A, 7sfe:A, 7sff:A, 7sfg:A, 5wvo:C, 4wxx:A, 6x9i:A, 6x9j:A, 6x9k:A, 7xi9:A, 7xib:A, 5ydr:B, 4yoc:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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