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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KLVLGGATLGVVALATVAFGMKYTDQRPFCTSCHIMNPVGVTHKLSGHANISCNDCHAPHNLLAKLPFKAIAGARDVYMN
TLGHPGDLILAGMETKEVVNANCKACHTMTNVEVASMEAKKYCTDCHRNVQHMRMKPISTREVADE

The query sequence (length=146) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2vr0:F 146 146 1.0000 1.0000 1.0000 2.94e-108 2j7a:C, 2j7a:F, 2j7a:I, 2j7a:L, 2j7a:O, 2j7a:R, 2vr0:C
2 1qo8:A 564 100 0.2055 0.0532 0.3000 0.100 1qo8:D
3 6qyc:B 608 111 0.1918 0.0461 0.2523 0.11 6qyc:A, 6qyc:C, 6r2q:C
4 1d4c:A 570 35 0.0959 0.0246 0.4000 1.3 1d4c:C, 1d4c:B, 1d4c:D, 1d4d:A, 1d4e:A
5 6r2q:A 265 110 0.1918 0.1057 0.2545 2.1
6 2a3m:A 107 70 0.1438 0.1963 0.3000 2.1 2a3p:A
7 3h0g:M 1476 30 0.0753 0.0075 0.3667 2.4
8 2dmi:A 115 106 0.1712 0.2174 0.2358 2.6
9 1a2i:A 107 98 0.2055 0.2804 0.3061 3.7 2bpn:A, 2cth:A, 2cth:B, 2cym:A, 1gx7:E, 1mdv:A, 1mdv:B
10 6t5e:A 439 40 0.1027 0.0342 0.3750 4.2
11 6d3h:M 287 61 0.1370 0.0697 0.3279 4.6 6d3i:A
12 1j0p:A 108 85 0.1781 0.2407 0.3059 5.0 2cdv:A, 2ewi:A, 2ewk:A, 2ewu:A, 2ffn:A, 1it1:A, 1j0o:A, 1wr5:A, 2yxc:A, 2yyw:A, 2yyx:A, 2z47:A, 2z47:B
13 6btm:A 221 30 0.0753 0.0498 0.3667 7.6
14 4rkm:B 660 30 0.0753 0.0167 0.3667 8.7 4rkm:A, 4rkm:I, 4rkm:C, 4rkm:D, 4rkm:K, 4rkm:E, 4rkm:F, 4rkm:H, 4rkm:L, 4rkm:J, 4rkm:G, 4rkn:A, 4rkn:C, 4rkn:B, 4rkn:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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