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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KLEKALKAQNDLIWNIKDELKKVCSTNDLKELLIFNKQQVPSGESAILDRVADGMVFGALLPCEECSGQLVFKSDAYYCT
GDVTAWTKCMVKTQTPNRKEWVTPKEFREISYLKKLKVKKQDRIFP

The query sequence (length=126) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8g0h:C 227 126 1.0000 0.5551 1.0000 3.61e-90 4av1:A, 4av1:C, 4dqy:D, 4dqy:A, 4dqy:B, 4dqy:E, 8g0h:A, 2jvn:A, 3od8:A, 3od8:B, 3od8:C, 3od8:E, 3od8:G, 3od8:H, 3oda:A, 3oda:B, 3oda:C, 3oda:E, 3oda:G, 3oda:H, 4opx:D, 4opx:A, 4oqa:D, 4oqa:A, 4oqb:D, 4oqb:A, 2riq:A, 7s68:A, 7s6h:C, 7s6h:A, 7s6m:A, 7s6m:C, 7s81:I, 7s81:F, 7s81:G, 7s81:O, 7s81:J, 7s81:B
2 2w4l:C 142 49 0.1190 0.1056 0.3061 0.35
3 6hjw:B 245 46 0.0952 0.0490 0.2609 2.1 6hjw:A
4 7b1s:C 265 63 0.1429 0.0679 0.2857 3.6 7b1s:F, 7b2c:C, 7b2c:F
5 4xln:J 1367 44 0.1270 0.0117 0.3636 5.3 3aoh:D, 3aoh:N, 3aoi:D, 3aoi:N, 6asg:D, 4gzy:D, 4gzz:D, 5i2d:D, 5i2d:O, 4mq9:D, 7rdq:D, 4wqt:D, 4wqt:I, 4wqt:N, 4xlp:J, 4xlq:J, 4xlr:J, 4xls:J
6 5tjg:D 1475 44 0.1270 0.0108 0.3636 5.3
7 4yd9:A 1656 37 0.0952 0.0072 0.3243 6.8 4yd9:D, 4yd9:G, 4yd9:J, 4yd9:M, 4yd9:P, 4yd9:S, 4yd9:V, 4yd9:Y, 4yd9:b
8 2w4l:E 162 38 0.0952 0.0741 0.3158 7.9 2w4l:A, 2w4l:B, 2w4l:D, 2w4l:F
9 2buf:C 298 77 0.1825 0.0772 0.2987 9.2 2buf:A, 2buf:B, 2buf:D, 2buf:E, 2buf:F, 2buf:G, 2buf:H, 2buf:I, 2buf:J, 2buf:L
10 4u3e:A 637 37 0.1111 0.0220 0.3784 9.7 4coi:A, 4coi:B, 4coj:A, 4coj:B, 4col:A, 4col:B, 4com:A, 4com:B, 4u3e:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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