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BioLiP
>protein
KKTNWLKRIYRVRPCVKCKVAPRNWKVKNKHLRIYNMCKTCFNNSIDIGDDTYHGHDDWLMYA

The query sequence (length=63) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3dgl:A 69 63 0.9683 0.8841 0.9683 3.66e-41 3dgm:A, 3dgn:A, 3dgo:A, 3lt8:A, 3lt9:A, 3lta:A, 3ltb:A, 3ltc:A, 3ltd:A, 2p05:A, 2p09:A, 1uw1:A
2 2p0x:A 64 54 0.6984 0.6875 0.8148 2.54e-30
3 6k15:H 393 36 0.1746 0.0280 0.3056 4.5 6kw4:H, 6kw5:H, 6v8o:I, 6v92:I
4 1ffy:A 917 35 0.1905 0.0131 0.3429 5.3 1qu2:A, 1qu3:A
5 5mfa:A 588 37 0.1587 0.0170 0.2703 9.9 6azp:A, 6bmt:A, 4c1m:D, 4c1m:C, 4c1m:A, 4c1m:B, 1cxp:D, 1cxp:C, 1cxp:A, 1cxp:B, 1d2v:D, 1d2v:C, 1d2v:A, 1d2v:B, 1d5l:D, 1d5l:C, 1d5l:A, 1d5l:B, 1d7w:D, 1d7w:C, 1d7w:A, 1d7w:B, 4dl1:D, 4dl1:C, 4dl1:H, 4dl1:G, 4dl1:L, 4dl1:K, 4dl1:P, 4dl1:O, 4dl1:A, 4dl1:B, 4dl1:E, 4dl1:F, 4dl1:I, 4dl1:J, 4dl1:M, 4dl1:N, 1dnu:D, 1dnu:C, 1dnu:A, 1dnu:B, 1dnw:D, 1dnw:C, 1dnw:A, 1dnw:B, 4ejx:B, 4ejx:D, 3f9p:C, 3f9p:D, 3f9p:A, 3f9p:B, 5fiw:A, 5fiw:C, 5fiw:B, 5fiw:D, 7lae:A, 7lae:B, 7lae:E, 7lae:D, 7lag:E, 7lag:B, 7lag:I, 7lag:G, 7lag:A, 7lag:D, 7lag:F, 7lag:H, 7lal:B, 7lal:A, 7lal:E, 7lal:D, 7lan:E, 7lan:B, 7lan:I, 7lan:G, 7lan:A, 7lan:D, 7lan:F, 7lan:H, 1mhl:D, 1mhl:C, 1mhl:A, 1mhl:B, 1myp:C, 1myp:A, 1myp:D, 1myp:B, 7ni1:A, 7ni1:C, 7ni1:B, 7ni1:D, 7ni3:A, 7ni3:C, 7ni3:B, 7ni3:D, 7oih:H, 7oih:G, 7oih:B, 7oih:A, 7oih:D, 7oih:C, 7oih:F, 7oih:E, 5qj2:B, 5qj2:A, 5qj2:E, 5qj2:D, 5qj2:G, 5qj2:F, 5qj2:I, 5qj2:H, 5qj3:B, 5qj3:A, 5qj3:D, 5qj3:E, 7qzr:D, 7qzr:B, 7qzr:A, 7qzr:C, 5uzu:A, 5wdj:B, 5wdj:A, 5wdj:D, 5wdj:E, 6wxz:B, 6wxz:E, 6wxz:A, 6wxz:D, 6wy0:E, 6wy0:B, 6wy0:I, 6wy0:G, 6wy0:A, 6wy0:D, 6wy0:F, 6wy0:H, 6wy5:E, 6wy5:B, 6wy5:A, 6wy5:D, 6wy7:E, 6wy7:B, 6wy7:A, 6wy7:D, 6wyd:A, 6wyd:B, 6wyd:E, 6wyd:D, 6wyd:G, 6wyd:F, 6wyd:H, 6wyd:I, 7z53:D, 7z53:B, 7z53:J, 7z53:H, 7z53:P, 7z53:N, 7z53:V, 7z53:T, 7z53:A, 7z53:C, 7z53:G, 7z53:I, 7z53:M, 7z53:O, 7z53:S, 7z53:U, 3zs0:D, 3zs0:C, 3zs0:A, 3zs0:B, 3zs1:A, 3zs1:C, 3zs1:B, 3zs1:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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