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BioLiP
>protein
KKGRRSRRCGQCPGCQVPEDCGVCTNCLDKPKFGGRNIKKQCCKMRKCQNLQWMPSK

The query sequence (length=57) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2j2s:A 72 57 1.0000 0.7917 1.0000 2.49e-36 2jyi:A, 2kkf:A, 4nw3:A
2 4pzi:A 61 48 0.5263 0.4918 0.6250 6.17e-15
3 5w9q:A 56 48 0.4211 0.4286 0.5000 6.84e-09 5w9q:B
4 3qmb:A 54 46 0.4035 0.4259 0.5000 9.09e-09 3qmc:A, 3qmd:A, 3qmg:A, 3qmh:A, 3qmi:A
5 4wxx:B 1178 48 0.4211 0.0204 0.5000 1.62e-06 3epz:A, 3epz:B, 7lmk:A, 7lmk:B, 7lmk:C, 7lmk:D, 7lmm:A, 7lmm:B, 7lmm:C, 7lmm:D, 3pta:A, 7sfc:A, 7sfd:A, 7sfe:A, 7sff:A, 7sfg:A, 5wvo:C, 4wxx:A, 6x9i:A, 6x9j:A, 6x9k:A, 7xi9:A, 7xib:A, 5ydr:B, 4yoc:A
6 3swr:A 965 45 0.4211 0.0249 0.5333 1.93e-06
7 3pt6:B 915 45 0.4386 0.0273 0.5556 2.62e-06 4da4:A, 3pt6:A, 6w8v:A
8 4hp1:C 51 50 0.3509 0.3922 0.4000 1.16e-04 4hp3:C
9 5exh:C 45 49 0.3158 0.4000 0.3673 0.002 4z3c:C
10 4bbq:A 111 44 0.3684 0.1892 0.4773 0.002 4bbq:B
11 4o64:A 116 45 0.3684 0.1810 0.4667 0.002 4o64:B, 4o64:C
12 5vc9:C 46 52 0.3333 0.4130 0.3654 0.003 5vc9:F
13 6asd:C 45 48 0.3333 0.4222 0.3958 0.026
14 6asb:I 121 29 0.2456 0.1157 0.4828 0.34 6asb:C, 6asb:L
15 6asb:F 85 30 0.2456 0.1647 0.4667 0.57
16 5w9s:C 44 49 0.2807 0.3636 0.3265 0.97
17 7evo:D 200 25 0.1930 0.0550 0.4400 1.2 8hk1:D, 6n3e:A, 6n3f:C, 6nsx:A
18 1oyw:A 516 14 0.1579 0.0174 0.6429 5.4 1oyy:A
19 4ylf:A 276 29 0.1579 0.0326 0.3103 6.3 4ylf:C, 4yry:A, 4yry:C
20 4q47:A 513 19 0.1404 0.0156 0.4211 8.8 4q47:B, 4q48:A, 4q48:B
21 7uu5:A 379 37 0.2105 0.0317 0.3243 9.3 8e40:A, 8edj:A, 5k81:A, 5k81:B, 5k81:C, 5k81:D, 5k81:E, 5k81:F, 5k82:A, 5k82:B, 5k82:C, 5k82:D, 5k83:C, 5k83:E, 5k83:A, 5k83:D, 5k83:F, 5k83:B, 6p3x:A, 6p3x:B, 6p3y:A, 6p3y:B, 6p3z:A, 6p3z:B, 6p40:A, 6p40:B, 7uu3:A, 7uu3:B, 7uu4:A, 7uu5:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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