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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KIIINLFAPNLPGSTKEDDLIQKSLRDQLVESIRNSIAYGRNVFFVDGTRGAGKTTFINSVVKSLNSDQDDVKVNIKCLP
TIDPTKLPRHEPILVTVTARLNKMVSDKLKGYWASNDYRKQKEQWQNHLAQLQRGLHLLTDKEYKPEYFSDALKLDAQLD
YSIGGQDLSEIFEELVKRACEILDCKAILITFDDIDTQFDAGWDVLESIRKFFNSRKLVVVATGDLRLYSQLIRGKQYEN
YSKTLLEQEKESVRLAERGYMVEHLEQQYLLKLFPVQKRIQLKTMLQLVGEKGKAGKEEIKVKTEPGMQDIDAIDVRQAI
GDAVREGLNLREGSDADMYVNELLKQPVRLLMQVLQDFYTKKYHATSLSVPNLLRNALYGSMLSSIYRAGLNYEQHRFGM
DSLCKDIFTYVKQDRDFNTGFYLRPQSESEALRNCSIYLASQVSENCQGSLSKFLQMLLVGCGSVSIFNQFVTELAEKFE
QLISEYVAYMSVGRIESASHWANRCCAVVANSPNDEKIGVFLGMVQLNRKSRQHMPGGYKKFNIDTENGLAKAAMASSLS
TVASNNLMDFCSVFNLIGAIADISACRCERSAITNAFNKVIAQTTCIVPPWSEATEFSDAITKVEQWLKNVNEIEIGIRP
SALLIGKVWSRFYFNLNNVADQHKTRLYRNAEHGRMASQSNAAKIMRFNVLAFLHAVLVEESLYHSVSDREYIGEGLRLN
PVTSVDEFEKKIKIIGEKLKADNKTWKNTHPLFFLLISCPILHPFIFPVGGINCSVKALNKETSFNKLIDEIVGDKLLSD
EEWDYLTKQQIFQNTITSLNSSTIVGASYDKDTPA

The query sequence (length=835) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8hr8:G 830 835 0.9940 1.0000 0.9940 0.0 8hr9:G, 8hr9:N
2 8hra:C 852 854 0.9964 0.9765 0.9742 0.0 8hr8:A, 8hr8:C, 8hr8:F, 8hr8:H, 8hr9:A, 8hr9:C, 8hr9:F, 8hr9:H, 8hr9:I, 8hr9:J, 8hr9:M, 8hr9:O, 8hra:D, 8hra:E, 8hra:H, 8hra:A, 8hra:B, 8hra:G, 8hrb:D, 8hrb:E, 8hrb:C, 8hrb:H, 8hrb:A, 8hrb:B, 8hrb:M, 8hrb:P, 8hrb:L, 8hrb:R, 8hrb:F, 8hrb:K, 8hrb:Q, 8hrb:G
3 6bge:A 323 49 0.0192 0.0495 0.3265 0.031 6bge:B, 1g6o:A, 1g6o:B, 1nly:A, 1nly:B
4 3vx4:D 240 65 0.0299 0.1042 0.3846 0.19 3vx4:A
5 4v4n:AO 197 49 0.0228 0.0964 0.3878 0.48 4v6u:BO
6 7cte:D 406 93 0.0323 0.0665 0.2903 0.58 7ctf:D, 7ctg:D, 7jpo:D, 7jpp:D, 7jpq:D, 7jpr:D, 7jps:D, 5uj7:C, 5uj7:D, 5ujm:D
7 5drv:A 131 55 0.0228 0.1450 0.3455 1.0
8 3h2y:A 309 63 0.0216 0.0583 0.2857 1.2
9 7vex:A 412 69 0.0299 0.0607 0.3623 1.4 8h4m:A
10 3glf:G 378 45 0.0156 0.0344 0.2889 1.4 8giy:B, 8giy:C, 8giy:D, 8giz:B, 8giz:C, 8giz:D, 8gj0:B, 8gj0:C, 8gj0:D, 8gj1:B, 8gj1:C, 8gj1:D, 8gj2:B, 8gj2:C, 8gj2:D, 8gj3:B, 8gj3:C, 8gj3:D, 3glf:B, 3glf:C, 3glf:D, 3glf:H, 3glf:I, 3glg:B, 3glg:C, 3glg:D, 3glg:G, 3glg:H, 3glg:I, 3gli:B, 3gli:C, 3gli:D, 3gli:G, 3gli:H, 3gli:I, 1jr3:A, 1jr3:B, 1jr3:C, 1njf:A, 1njf:B, 1njf:C, 1njf:D, 1njg:A, 1njg:B, 8val:B, 8val:C, 8val:D, 8vam:B, 8vam:C, 8vam:D, 8vap:B, 8vap:C, 8vap:D, 8vaq:B, 8vaq:C, 8vaq:D, 8var:B, 8var:C, 8var:D, 8vas:B, 8vas:C, 8vas:D, 8vat:B, 8vat:C, 8vat:D, 1xxh:B, 1xxh:C, 1xxh:D, 1xxh:G, 1xxh:H, 1xxh:I, 1xxi:B, 1xxi:C, 1xxi:D, 1xxi:G, 1xxi:H, 1xxi:I
11 8ssl:A 1072 44 0.0180 0.0140 0.3409 1.7 5cjt:A, 5cjt:B, 5cju:A, 5cju:B, 5cjv:A, 5cjv:B, 5cjw:A, 5cjw:B, 8ssl:B, 8ssl:C, 4xc6:A, 4xc6:B, 4xc7:A, 4xc8:A, 4xc8:B
12 8sgd:A 291 149 0.0467 0.1340 0.2617 1.9 8fwp:A, 8pfh:A, 8sgd:C
13 6nak:D 165 51 0.0204 0.1030 0.3333 2.3 6n9a:E, 6nak:E, 6s84:E, 6s84:B
14 8fo9:F 2289 40 0.0144 0.0052 0.3000 3.6 9c61:A, 9c61:B, 8fo2:E, 8fo7:C, 8fo8:C, 8fo8:E, 8fo9:E, 7lht:A, 7lht:B, 7lhw:A, 7li3:A, 7li4:A, 6oje:A, 6oje:B, 6ojf:A, 6ojf:B, 7thy:A, 7thz:A, 6xaf:A, 6xaf:B, 2zej:B
15 8tzf:A 1589 53 0.0180 0.0094 0.2830 5.1
16 3tr0:A 201 35 0.0144 0.0597 0.3429 5.8
17 4caz:A 489 46 0.0216 0.0368 0.3913 5.8 4caz:B, 2wme:A, 2wme:B, 2wme:C, 2wme:D, 2wme:E, 2wme:F, 2wme:G, 2wme:H, 2wox:A, 2wox:B, 2wox:C, 2wox:D, 2xdr:A, 2xdr:B, 2xdr:C, 2xdr:D, 3zqa:A, 3zqa:B, 3zqa:C, 3zqa:D
18 7jgr:D 441 24 0.0156 0.0295 0.5417 6.8 7jgs:D, 7jk2:D, 7jk3:D, 7jk4:D, 7jk5:D, 7jk6:D
19 4lim:A 381 44 0.0192 0.0420 0.3636 7.3
20 7d5s:RD 265 61 0.0216 0.0679 0.2951 7.4 6lqu:RD, 7suk:NJ, 5wlc:NJ
21 6cin:B 1169 61 0.0228 0.0163 0.3115 8.4 6cin:A, 6cin:C, 6cin:D, 6cin:E, 6cin:F, 6cio:A, 6cio:B, 6cio:C, 6cio:D, 6cio:E, 6cio:F, 6cip:A, 6cip:B, 6cip:C, 6cip:D, 6cip:E, 6cip:F, 6ciq:A, 6ciq:B, 6ciq:C
22 7yq0:A 173 98 0.0335 0.1618 0.2857 9.8 7yq0:B, 7yq1:A, 7yq1:B, 7yq1:C, 7yq1:D, 7yq1:E, 7yq1:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218